Detailed information NTG0621106

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: FH508_RS16445
• Genome accession: NZ_CP085880
• Coordinates: 3304827..3307268 (-)
• Length: 813 a.a.
• NCBI ID: WP_172772152.1
• Uniprot ID: -
• Organism: Lysinibacillus sp. CD3-6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3299827..3312268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FH508_RS16435 (FH508_0016465)	hpaB	3301292..3302722 (-)	1431	WP_172772150.1	4-hydroxyphenylacetate 3-monooxygenase, oxygenase component	-
FH508_RS16440 (FH508_0016470)	-	3303101..3304795 (-)	1695	WP_172772151.1	polysaccharide deacetylase family protein	-
FH508_RS16445 (FH508_0016475)	recD2	3304827..3307268 (-)	2442	WP_172772152.1	ATP-dependent RecD-like DNA helicase	Machinery gene
FH508_RS16450 (FH508_0016480)	hisA	3307460..3308227 (+)	768	WP_172772153.1	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-
FH508_RS16455 (FH508_0016485)	-	3308224..3308511 (+)	288	WP_172772154.1	hypothetical protein	-
FH508_RS16460 (FH508_0016490)	-	3308739..3309473 (+)	735	WP_172772155.1	GTP pyrophosphokinase family protein	-
FH508_RS16465 (FH508_0016495)	-	3309698..3310357 (-)	660	WP_172772156.1	lipopolysaccharide assembly protein LapB	-
FH508_RS16470 (FH508_0016500)	mnmA	3310499..3311623 (-)	1125	WP_172772157.1	tRNA 2-thiouridine(34) synthase MnmA	-

Sequence

Protein

• Length: 813 a.a.
• Molecular weight: 91520.75 Da
• Isoelectric Point: 4.8765

>NTDB_id=621106 FH508_RS16445 WP_172772152.1 3304827..3307268(-) (recD2) [Lysinibacillus sp. CD3-6]
MTENLDLFELNKLFILGRPIVSIFHNPQNMYSIVRVKIQETNLQYDDKEIIVVGYFPQLQMDEQYRFTGIMRQHPKYGVQ
FQVETFTKEVPATEQGIVHYLSSDLFVGIGKKTAETIVEKLGANTIRRILEDPNVLDVVPRLSAEKKEVIHRTIEQNLGL
ERVMIQLNEWGFGPQLGMKIYQTYRTETIDFLTENPYRLIEDVDGVGFFRADELGAKLGITGNHPDRIKAAILHTLNTAA
LSDGHVYLDAEHVLPQVKDMLEQSQRQEIPYEAISKACIEMREENKIYGEETRLYLPSLYFSEIGIASKIIALTERNSQA
KHFSKDEIRKAIGDTEAFLNVTYAETQAFAIEQALNSAVMILTGGPGTGKTTVVRGIVEVYAKLHGLSLNPKEYAQKEEP
FPIILCAPTGRAAKRLAESTELPAMTIHRLLGFTGQEKEEETEREVTGKLIIVDEMSMVDTWLAHQLLKSLHEDVQVVFV
GDQDQLPPVGPGQVLKDLLASQQIPTVELTDVYRQAEGSTIIELAHQIKRGTIPNDLTMKTSDRSFIKASPDQVANVVTQ
VVKSAVAKGQEIRNIQVLAPMYKGPAGIDNLNKMIQDLVNPNDTGTRKELIFGDVTYRIKDKVLQLVNQPESNVFNGDMG
EVISIIKAKETIEKQDLLVVSFDGIEVTYQRSDLNQLTLAYCCSIHKSQGSEFQTVIMPVVRGYSKMLRRNLLYTGITRA
KNFLILCGEPDVLANGLQRTDDLQRFTSLRARLNPMDASPDEVNEVKEMSEETIGEERQDEPVTVLQLTVETLPYIHPMI
GMDGISPYDFMDN

Nucleotide

• Length: 2442 bp

>NTDB_id=621106 FH508_RS16445 WP_172772152.1 3304827..3307268(-) (recD2) [Lysinibacillus sp. CD3-6]
ATGACAGAAAATCTAGATTTATTTGAGTTGAATAAGCTATTTATTCTCGGCCGTCCTATTGTGTCTATTTTTCATAATCC
TCAAAATATGTATTCTATTGTACGTGTGAAAATTCAAGAAACAAATTTGCAATATGATGATAAGGAAATTATTGTTGTTG
GTTATTTCCCGCAACTGCAAATGGACGAACAATATCGTTTTACAGGAATTATGAGACAACATCCAAAATATGGTGTACAA
TTTCAAGTTGAGACGTTTACAAAAGAAGTGCCCGCAACTGAGCAAGGAATTGTTCATTACTTATCAAGTGATTTATTTGT
GGGGATAGGGAAGAAAACTGCTGAAACAATTGTTGAAAAGCTTGGTGCCAATACAATCCGTCGTATATTAGAAGATCCAA
ATGTGCTTGATGTTGTACCTCGATTATCGGCTGAAAAAAAGGAAGTCATTCATCGCACGATTGAGCAAAATCTTGGATTA
GAGCGTGTTATGATTCAATTGAATGAATGGGGATTTGGTCCACAGCTCGGAATGAAAATTTATCAAACATACCGTACAGA
AACGATTGATTTTTTGACTGAAAATCCTTATCGCCTCATTGAAGATGTGGACGGAGTTGGTTTTTTCCGTGCAGATGAGC
TTGGTGCAAAATTAGGGATTACTGGTAATCACCCTGACCGTATTAAGGCTGCGATTTTACATACTCTAAATACAGCTGCT
TTATCGGATGGTCATGTATATTTGGATGCTGAGCATGTCTTACCGCAAGTGAAAGATATGCTTGAGCAAAGCCAACGTCA
AGAAATTCCGTATGAAGCAATTTCTAAAGCTTGTATTGAGATGCGTGAGGAAAATAAAATATATGGAGAAGAAACAAGAC
TTTATTTGCCTTCCTTATATTTTTCGGAAATAGGCATTGCGTCAAAAATTATTGCGTTAACTGAACGAAATAGTCAGGCT
AAGCATTTTAGTAAAGATGAAATTCGCAAGGCGATTGGGGATACGGAAGCGTTTTTAAATGTTACGTATGCAGAAACACA
AGCTTTTGCGATAGAACAGGCTCTTAATTCAGCTGTGATGATTTTGACGGGTGGTCCTGGTACAGGAAAAACGACTGTTG
TTAGAGGCATTGTGGAAGTCTATGCAAAGCTTCACGGTCTTTCATTAAATCCTAAGGAGTATGCGCAAAAAGAAGAACCG
TTTCCTATTATTTTATGTGCACCAACAGGAAGAGCTGCTAAACGTTTAGCAGAGTCCACAGAGCTACCTGCTATGACAAT
CCACCGCTTGCTAGGTTTTACAGGACAGGAGAAGGAAGAAGAAACCGAGCGAGAGGTTACAGGGAAACTTATTATTGTCG
ATGAAATGTCAATGGTTGATACATGGCTTGCCCATCAGTTATTAAAATCACTACATGAAGATGTTCAAGTTGTTTTTGTA
GGTGACCAGGATCAGTTACCACCAGTAGGCCCTGGACAAGTACTCAAAGATTTACTTGCCTCACAACAAATTCCAACAGT
TGAACTGACGGATGTTTATCGACAGGCGGAAGGTTCGACAATTATAGAGCTTGCCCATCAAATTAAGCGGGGGACAATAC
CAAATGATTTGACGATGAAAACGTCTGATCGTTCATTTATTAAAGCTTCACCCGATCAAGTAGCAAATGTCGTAACGCAA
GTTGTAAAAAGTGCTGTAGCGAAAGGGCAAGAAATACGTAATATACAAGTTTTAGCACCGATGTATAAAGGGCCAGCAGG
CATTGATAATTTAAATAAAATGATTCAAGACCTTGTTAATCCGAATGATACAGGTACAAGAAAAGAGCTTATTTTTGGTG
ATGTAACGTATCGAATTAAGGACAAGGTGCTACAGCTTGTCAACCAGCCAGAAAGCAATGTCTTTAACGGCGATATGGGG
GAAGTCATTAGTATTATTAAAGCTAAAGAAACGATTGAAAAGCAGGATTTGCTTGTCGTGTCATTTGATGGTATTGAGGT
AACGTACCAACGGAGCGATCTTAATCAATTAACCCTAGCGTATTGTTGTTCGATTCATAAATCGCAGGGCTCTGAATTTC
AAACGGTGATTATGCCTGTTGTTCGTGGCTATTCTAAAATGCTACGTCGTAATTTGTTATATACTGGAATTACGCGGGCG
AAAAATTTCTTAATTTTATGCGGTGAGCCTGATGTGCTAGCTAATGGCTTACAGCGTACAGATGATTTACAACGGTTCAC
GTCTTTGCGAGCACGACTTAATCCAATGGATGCATCTCCAGATGAGGTCAATGAAGTGAAGGAGATGTCAGAGGAGACAA
TTGGAGAAGAACGACAAGACGAGCCTGTGACTGTTCTACAGCTAACAGTAGAGACATTACCATATATACATCCAATGATT
GGAATGGATGGCATTTCTCCATATGATTTTATGGATAACTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (343-549)

• Helix-hairpin-helix containing domain (HHH_RecD2) (159-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (680-727)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (591-660)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	53.149	97.663	0.519