Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HP399_RS21350 Genome accession   NZ_CP085876
Coordinates   4663966..4666227 (-) Length   753 a.a.
NCBI ID   WP_173618887.1    Uniprot ID   -
Organism   Brevibacillus sp. DP1.3A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4658966..4671227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HP399_RS21325 (HP399_021355) - 4660702..4661766 (-) 1065 WP_173618885.1 AI-2E family transporter -
  HP399_RS21330 (HP399_021360) - 4662146..4662832 (+) 687 WP_007717619.1 TerC family protein -
  HP399_RS21335 (HP399_021365) - 4662949..4663143 (-) 195 WP_228088569.1 hypothetical protein -
  HP399_RS21340 (HP399_021370) - 4663171..4663377 (-) 207 WP_007717618.1 hypothetical protein -
  HP399_RS21345 (HP399_021375) - 4663412..4663891 (-) 480 WP_173618886.1 PRC-barrel domain-containing protein -
  HP399_RS21350 (HP399_021380) recD2 4663966..4666227 (-) 2262 WP_173618887.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HP399_RS21355 (HP399_021385) - 4666308..4667972 (-) 1665 WP_173618888.1 methyl-accepting chemotaxis protein -
  HP399_RS21360 (HP399_021390) - 4668143..4669288 (-) 1146 WP_173618889.1 cysteine desulfurase family protein -
  HP399_RS21365 (HP399_021395) cymR 4669316..4669735 (-) 420 WP_007717608.1 cysteine metabolism transcriptional regulator CymR -
  HP399_RS21370 (HP399_021400) - 4669834..4670007 (+) 174 WP_173618890.1 hypothetical protein -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 85056.28 Da        Isoelectric Point: 4.9835

>NTDB_id=621071 HP399_RS21350 WP_173618887.1 4663966..4666227(-) (recD2) [Brevibacillus sp. DP1.3A]
MDEQQSISLFAENFIRGFVSQEIFYKEETWYGVIRLKIEETTESIKESEVIIVGNFPRPHPDELYTFYGEWKTHPRFGQQ
YVANRYERETPKTLAGVERYLASGLFQGIGKKMAKRIVEQLGVDALSIIADFPERLAEVPGISEQRAKTIYDSVVEHRSL
ESAMVFLYDFGIGVNMALRIYQTYKLETMTVLKEEPYRLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFVLQEAS
YSEGHVYLPVEELCEKTLGLLEECGGHVFSGDDIRLAVEALFVSSKIAWEDERVYLPSLFFAELGIAKRLRHFAERDEFG
TFPTSELYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPGTGKTTVIRGICRVFSQLHGLSLDLKKYSEENPFP
IVLVAPTGRAAKRMTETTGLPAMTIHRLLGYKGESFEHDAEHPICGRLLIVDEMSMVDIWLANQLFRAVPDDMQIIMVGD
PDQLPSVGPGNVLLDMIRSGLLPLVQLTEIYRQAEESTIIRLAHDVRKGNVPADLLHTTPDRRFFTSLPQEVPEAVKQIC
FGAVKKGYTAKDVQVLAPIYKGNAGVNRLNEELQELFNPKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIV
AIFFPNENAENQEMLVAAFDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLVYTGITRSKSF
LIMCGEPDAFRAAVESDEEGVRYSYLEERLKQE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=621071 HP399_RS21350 WP_173618887.1 4663966..4666227(-) (recD2) [Brevibacillus sp. DP1.3A]
ATGGACGAGCAGCAGTCAATCTCGCTGTTTGCAGAAAACTTCATTAGAGGATTTGTTTCTCAAGAAATTTTTTACAAGGA
AGAAACGTGGTACGGAGTTATCCGTCTTAAGATAGAAGAGACTACCGAATCGATTAAAGAATCGGAGGTCATTATTGTTG
GTAATTTTCCTCGCCCGCATCCAGATGAGCTGTACACCTTTTACGGTGAATGGAAGACACACCCTCGTTTTGGGCAGCAG
TACGTAGCAAATCGCTATGAACGTGAAACGCCAAAAACATTGGCCGGGGTTGAGCGTTACTTAGCCAGTGGCTTGTTTCA
AGGGATTGGAAAGAAAATGGCCAAACGAATTGTCGAGCAGCTCGGGGTAGATGCGCTGTCAATTATTGCGGACTTCCCGG
AGCGATTGGCTGAGGTACCAGGCATTTCTGAACAACGTGCCAAAACGATCTATGATTCAGTAGTCGAGCATCGTTCCTTG
GAAAGTGCCATGGTTTTCTTGTACGACTTCGGCATTGGTGTGAACATGGCGCTGCGTATTTATCAGACCTACAAGCTGGA
AACGATGACAGTGCTGAAGGAAGAGCCTTATCGGTTGATTGAGGATGTCGTAGGAATCGGCTTTAAGCGGGCAGATGACA
TTGCACGAGCAACTGGAATCGCTGCTTCCTCAGAAGAACGTGTGAAGGCGGCGGCCCTCTTTGTCTTACAGGAGGCTTCG
TATTCAGAAGGACATGTTTATTTGCCTGTGGAGGAGCTTTGTGAAAAAACGCTAGGCCTTCTCGAAGAGTGCGGGGGGCA
CGTCTTTTCTGGAGACGATATTCGACTGGCCGTGGAAGCTCTGTTTGTGTCGAGCAAAATTGCCTGGGAAGATGAGCGGG
TGTATTTGCCCTCGCTGTTTTTTGCCGAGCTCGGTATTGCCAAAAGACTGCGTCACTTCGCTGAGCGGGATGAATTCGGC
ACGTTCCCGACATCAGAATTATACCGTGCATTAGGGGCGGTTGAGGATGAGCTGGGGATTACGTATGCCCAGACACAGCG
TGATGCCATTGAACAGGCGATCAAAGCAGGTCTGATGCTTTTGACAGGGGGACCTGGTACGGGGAAAACGACAGTCATTC
GTGGGATCTGTCGTGTCTTTTCTCAGCTTCATGGATTGTCTCTGGACTTGAAAAAATACAGCGAAGAAAATCCGTTCCCG
ATCGTTCTTGTGGCTCCTACTGGACGTGCAGCAAAACGTATGACAGAGACTACGGGTTTACCAGCGATGACCATCCATCG
CTTGCTCGGTTACAAAGGGGAGAGCTTCGAGCATGACGCGGAGCACCCAATCTGTGGCCGGCTATTAATTGTGGATGAAA
TGTCCATGGTCGATATCTGGCTCGCAAATCAATTGTTTCGTGCGGTCCCAGACGACATGCAGATCATCATGGTAGGTGAC
CCAGACCAGTTGCCTTCCGTAGGACCAGGCAACGTCCTGTTGGATATGATTCGATCTGGATTGCTACCGCTGGTACAGCT
GACAGAAATTTATCGGCAAGCAGAAGAGTCCACCATTATTCGCTTGGCCCATGATGTACGCAAGGGGAATGTACCGGCAG
ATTTGCTTCACACCACCCCGGATCGGCGATTCTTCACAAGTTTGCCACAAGAAGTTCCTGAAGCAGTGAAACAAATTTGC
TTCGGAGCCGTAAAAAAAGGATATACGGCAAAAGATGTTCAGGTATTAGCCCCTATCTATAAAGGTAATGCCGGTGTGAA
CCGGTTGAATGAAGAATTGCAGGAGCTGTTTAATCCGAAAACACCGCAAAAGCGTGAAGTTACTTTCGGAGAGACGACTT
TCCGTACTGGAGACAAGGTTCTGCAATTGGTGAACAATGCTGAAGAACAGGTGTTTAACGGTGACATGGGTGAGATCGTC
GCCATCTTTTTCCCGAATGAAAATGCGGAGAACCAGGAGATGCTGGTCGCTGCTTTTGATAACAGGGAAGTGGTGTACAA
GCGTTCGGATTATCATCAGCTGACGCTTGCCTACTGCTGCTCGGTTCATAAGTCTCAAGGCAGCGAATTTCCGATTGTGA
TCATGCCGTTTGTCAAAAGCTACTACCGTATGCTCAGACGCAAGCTGGTCTATACCGGGATTACCCGGAGCAAATCATTC
CTCATCATGTGTGGAGAGCCGGATGCGTTCCGCGCTGCTGTAGAGTCTGATGAGGAGGGGGTACGGTACAGTTACCTAGA
GGAACGGCTAAAGCAAGAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)

Helix-hairpin-helix domain (HHH_5)

(107-152)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)

AAA domain (AAA_30)

(342-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.663

99.336

0.483