Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   JK088_RS00685 Genome accession   NZ_CP085857
Coordinates   148752..149477 (-) Length   241 a.a.
NCBI ID   WP_017449060.1    Uniprot ID   A0A4Z6AQU4
Organism   Vibrio parahaemolyticus strain LH214     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143752..154477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JK088_RS00660 (JK088_00660) - 144871..145362 (+) 492 WP_005458943.1 type II secretion system protein M -
  JK088_RS00665 (JK088_00665) - 145364..146125 (+) 762 WP_005496730.1 type II secretion system protein N -
  JK088_RS00670 (JK088_00670) cysQ 146411..147238 (-) 828 WP_140352274.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  JK088_RS00675 (JK088_00675) nudE 147280..147849 (-) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  JK088_RS00680 (JK088_00680) nfuA 148070..148654 (-) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  JK088_RS00685 (JK088_00685) comF 148752..149477 (-) 726 WP_017449060.1 amidophosphoribosyltransferase Machinery gene
  JK088_RS00690 (JK088_00690) bioH 149562..150329 (+) 768 WP_180911956.1 pimeloyl-ACP methyl ester esterase BioH -
  JK088_RS00695 (JK088_00695) - 150453..150917 (+) 465 WP_005459035.1 hypothetical protein -
  JK088_RS00700 (JK088_00700) - 151053..153374 (-) 2322 WP_025573989.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27725.91 Da        Isoelectric Point: 8.9991

>NTDB_id=620836 JK088_RS00685 WP_017449060.1 148752..149477(-) (comF) [Vibrio parahaemolyticus strain LH214]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=620836 JK088_RS00685 WP_017449060.1 148752..149477(-) (comF) [Vibrio parahaemolyticus strain LH214]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACACAATTGCTTGCCCAACGCATTTCAACTCCCGCTCCGCTTATCACCACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z6AQU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485