Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LJY22_RS00690 Genome accession   NZ_CP085843
Coordinates   149551..150276 (-) Length   241 a.a.
NCBI ID   WP_114323039.1    Uniprot ID   -
Organism   Vibrio diabolicus strain NV27     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144551..155276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJY22_RS00660 (LJY22_00660) gspL 144605..145807 (+) 1203 WP_257897103.1 type II secretion system protein GspL -
  LJY22_RS00665 (LJY22_00665) - 145815..146306 (+) 492 WP_005394974.1 type II secretion system protein M -
  LJY22_RS00670 (LJY22_00670) - 146308..147069 (+) 762 WP_054867791.1 type II secretion system protein N -
  LJY22_RS00675 (LJY22_00675) cysQ 147251..148078 (-) 828 WP_005394972.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  LJY22_RS00680 (LJY22_00680) nudE 148123..148692 (-) 570 WP_005394971.1 ADP compounds hydrolase NudE -
  LJY22_RS00685 (LJY22_00685) nfuA 148869..149453 (-) 585 WP_006741794.1 Fe-S biogenesis protein NfuA -
  LJY22_RS00690 (LJY22_00690) comF 149551..150276 (-) 726 WP_114323039.1 ComF family protein Machinery gene
  LJY22_RS00695 (LJY22_00695) bioH 150361..151128 (+) 768 WP_006741796.1 pimeloyl-ACP methyl ester esterase BioH -
  LJY22_RS00700 (LJY22_00700) - 151253..151717 (+) 465 WP_005379316.1 hypothetical protein -
  LJY22_RS00705 (LJY22_00705) - 151822..154143 (-) 2322 WP_257897104.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27741.88 Da        Isoelectric Point: 9.0519

>NTDB_id=620790 LJY22_RS00690 WP_114323039.1 149551..150276(-) (comF) [Vibrio diabolicus strain NV27]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPNHTHALRWCEHCLQHLTPIKRCQRCGLTLQKEEMSTDSICGECLSEPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTQQLAQHITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAQQLQTNFDA
KVFRRVRLAQSQRGNTKASREQNLKGAFVLNKRPPSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=620790 LJY22_RS00690 WP_114323039.1 149551..150276(-) (comF) [Vibrio diabolicus strain NV27]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGTTGAGCAGTCAATGCGGTCTGTGTCGATTCCCGATTCAAAC
ACCAAACCACACGCATGCTCTGCGTTGGTGTGAGCACTGCTTACAACACCTAACTCCAATCAAGCGATGCCAACGTTGCG
GTTTAACGTTACAGAAAGAAGAGATGAGTACGGATAGTATTTGTGGTGAATGCCTTTCAGAACCACCGCCATGGCAAAGG
CTGTACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCACTAACCCAGCAACTGGCGCAGCACATTACAACACCAGCTCCAATCATTACCAGTGTACCATTGCACTGGCAGC
GCTACCTACGCCGGGGATTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCCAGCAATTGCAAACCAATTTTGATGCG
AAGGTCTTTCGCCGGGTCAGACTCGCCCAATCACAGCGTGGTAATACCAAAGCAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTGTTCTCAATAAGCGACCGCCATCTTCCCACGTTGCCATCGTCGATGATGTGGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.951

100

0.739
  comF Vibrio cholerae strain A1552

48.333

99.585

0.481