Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NW945_RS05880 Genome accession   NZ_CP102974
Coordinates   1222716..1223489 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 01-RR-86     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217716..1228489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS05860 (NW945_05860) trmFO 1218059..1219366 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  NW945_RS05865 (NW945_05865) xerC 1219783..1220679 (+) 897 WP_258414634.1 tyrosine recombinase XerC -
  NW945_RS05870 (NW945_05870) hslV 1220676..1221221 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  NW945_RS05875 (NW945_05875) hslU 1221287..1222690 (+) 1404 WP_258414660.1 ATP-dependent protease ATPase subunit HslU -
  NW945_RS05880 (NW945_05880) codY 1222716..1223489 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NW945_RS05885 (NW945_05885) - 1223540..1223632 (+) 93 WP_001790530.1 hypothetical protein -
  NW945_RS05890 (NW945_05890) rpsB 1223831..1224598 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  NW945_RS05895 (NW945_05895) - 1224632..1224745 (+) 114 WP_001789890.1 hypothetical protein -
  NW945_RS05900 (NW945_05900) tsf 1224780..1225661 (+) 882 WP_000201387.1 translation elongation factor Ts -
  NW945_RS05905 (NW945_05905) pyrH 1225798..1226520 (+) 723 WP_000057330.1 UMP kinase -
  NW945_RS05910 (NW945_05910) frr 1226539..1227093 (+) 555 WP_258414635.1 ribosome recycling factor -
  NW945_RS05915 (NW945_05915) - 1227466..1228236 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=620590 NW945_RS05880 WP_000055337.1 1222716..1223489(+) (codY) [Staphylococcus aureus strain 01-RR-86]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=620590 NW945_RS05880 WP_000055337.1 1222716..1223489(+) (codY) [Staphylococcus aureus strain 01-RR-86]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACTATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428