Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   GDK20_RS08565 Genome accession   NZ_AP019545
Coordinates   1737837..1739111 (+) Length   424 a.a.
NCBI ID   WP_000102729.1    Uniprot ID   -
Organism   Staphylococcus aureus strain KG-22     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1732837..1744111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDK20_RS08535 (SAKG22_16060) mnmA 1733039..1734157 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  GDK20_RS08540 (SAKG22_16070) - 1734158..1735300 (-) 1143 WP_152064744.1 cysteine desulfurase family protein -
  GDK20_RS08545 (SAKG22_16080) - 1735612..1736625 (+) 1014 WP_000985878.1 LLM class flavin-dependent oxidoreductase -
  GDK20_RS08550 (SAKG22_16090) - 1736862..1737008 (-) 147 WP_000009238.1 SAS049 family protein -
  GDK20_RS08555 (SAKG22_16100) - 1737048..1737230 (-) 183 WP_000752909.1 CsbD family protein -
  GDK20_RS08560 (SAKG22_16110) - 1737330..1737752 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  GDK20_RS08565 (SAKG22_16120) rarA 1737837..1739111 (+) 1275 WP_000102729.1 replication-associated recombination protein A Machinery gene
  GDK20_RS08570 (SAKG22_16130) - 1739272..1740045 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  GDK20_RS08575 - 1740045..1740173 (-) 129 WP_001790559.1 hypothetical protein -
  GDK20_RS08585 (SAKG22_16140) aspS 1740506..1742272 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  GDK20_RS08590 (SAKG22_16150) hisS 1742288..1743550 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47222.80 Da        Isoelectric Point: 8.3526

>NTDB_id=61986 GDK20_RS08565 WP_000102729.1 1737837..1739111(+) (rarA) [Staphylococcus aureus strain KG-22]
MSTEPLASRMRPKNIDEIISQQHLVGPKGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=61986 GDK20_RS08565 WP_000102729.1 1737837..1739111(+) (rarA) [Staphylococcus aureus strain KG-22]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAAAGGCATTATCAGAAGAATGGTTGACACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTGTTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATTGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGATAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGTCAAATTCCAAATCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTTAAAAACAAAATTTATTAT
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684

Multiple sequence alignment