Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIT35_RS17330 Genome accession   NZ_CP085720
Coordinates   3503370..3505760 (-) Length   796 a.a.
NCBI ID   WP_127761466.1    Uniprot ID   A0A3Q9RQG4
Organism   Peribacillus asahii strain KF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3498370..3510760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT35_RS17315 (LIT35_17395) - 3501183..3502259 (-) 1077 WP_127761463.1 AI-2E family transporter -
  LIT35_RS17320 (LIT35_17400) - 3502518..3502754 (-) 237 WP_127761464.1 hypothetical protein -
  LIT35_RS17325 (LIT35_17405) - 3502723..3503175 (-) 453 WP_127761465.1 PRC-barrel domain-containing protein -
  LIT35_RS17330 (LIT35_17410) recD2 3503370..3505760 (-) 2391 WP_127761466.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIT35_RS17335 (LIT35_17415) - 3505798..3506463 (-) 666 WP_127761467.1 tetratricopeptide repeat protein -
  LIT35_RS17340 (LIT35_17420) mnmA 3506557..3507672 (-) 1116 WP_127761468.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIT35_RS17345 (LIT35_17425) - 3507686..3508831 (-) 1146 WP_127761469.1 cysteine desulfurase family protein -
  LIT35_RS17350 (LIT35_17430) - 3508953..3509372 (-) 420 WP_127761470.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90132.98 Da        Isoelectric Point: 5.0007

>NTDB_id=619630 LIT35_RS17330 WP_127761466.1 3503370..3505760(-) (recD2) [Peribacillus asahii strain KF4]
MSQQEALDLFSEEKQFMKGRHLVTIFHNEENMYSVVRIRLDETNLNYDEQEAVVTGYFPRIHEHETYIFYGVLKEHPRFG
LQFQVNHFRKDLPQSKEGIVAYLSGDMFKGIGKKTAESIVETLGENAISKILAQPSVLDNIPRLSGEKAKALYDTLLENE
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTVSIIQSNPYKLVEDIEGIGFGRADELGFQLGISGGHPDRIKAACLYCLDT
QCMQDGHVYMEAEELLEAVQRLLEENKRDVIEFTNISSEIIKLEAERKIVVEETRIYLPALYFSEKGIVMNIQRLLQQTE
YEDQFPESEFLLALGELEERLGVTYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYSELHGVSMNIKDYKKDE
EPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFAHDADNPIEGRIVIIDEMSMVDTWLAHQLLKALPEHSQL
ILVGDEDQLPSVGPGQVLKDLLASKAIPTIALQHIYRQADGSSIIELAHEMKKGHVPHDVAKQQVDRSFIRCQQSQMADV
IKQVVQNARKKGYSSRDIQVLAPMYKGPAGIDVLNKMLQEVLNGDSEKKRRELQFGDVVYRTGDKVLQLVNQPEEGVFNG
DMGEIVTIIFAKENTDHVDKVVISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVRSYYRMLRRNLLYTAI
TRSKDFLIICGEEEAFRLGVERNDETQRRTTLREKLQEIHARSDTKVIEEGESYLDRLMNEDPMIGMGDVTPYHFM

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=619630 LIT35_RS17330 WP_127761466.1 3503370..3505760(-) (recD2) [Peribacillus asahii strain KF4]
TTGAGTCAACAAGAGGCTTTAGATTTGTTTTCGGAAGAGAAGCAGTTTATGAAAGGGCGGCACTTAGTGACAATTTTTCA
TAATGAGGAAAATATGTATTCTGTTGTTCGGATTCGCTTGGATGAAACAAATTTGAATTATGATGAGCAGGAAGCTGTCG
TGACTGGTTATTTCCCACGTATTCATGAGCATGAAACGTATATCTTTTACGGAGTATTGAAGGAGCATCCTCGCTTCGGT
CTACAGTTTCAAGTTAATCATTTTCGCAAAGATTTGCCACAGTCGAAGGAAGGTATTGTGGCTTATTTATCCGGCGATAT
GTTTAAAGGAATTGGGAAGAAGACGGCAGAAAGCATTGTGGAAACGCTTGGTGAAAATGCAATTTCAAAAATTTTAGCGC
AGCCTTCCGTACTGGATAATATTCCGCGTCTGTCAGGCGAGAAAGCAAAAGCCTTATATGATACATTGCTTGAAAATGAA
GGTCTTGAGCAAGTGATGATTGCACTGAATCAATATGGTTTTGGACCGCAGCTTTCGATGAAAATTTATCAAATGTATAA
ACAGGATACGGTTTCTATTATTCAAAGTAACCCATATAAGCTTGTAGAGGATATTGAGGGAATTGGTTTTGGACGGGCGG
ATGAACTTGGATTTCAGCTAGGCATTTCCGGGGGGCATCCAGATCGTATTAAAGCGGCTTGCCTATATTGCCTTGACACG
CAATGCATGCAGGATGGACATGTCTATATGGAGGCGGAGGAATTATTAGAGGCCGTTCAACGTTTATTGGAAGAAAATAA
GCGTGATGTCATTGAATTTACGAATATTTCCTCAGAAATAATCAAATTAGAAGCGGAAAGAAAGATTGTTGTCGAGGAAA
CACGTATTTACTTGCCTGCTTTGTACTTCTCGGAAAAAGGAATTGTCATGAATATTCAACGGCTCCTGCAACAAACAGAG
TATGAAGACCAGTTTCCAGAATCGGAGTTTTTATTAGCGCTTGGTGAATTGGAGGAGCGTCTTGGTGTGACATACGCTCC
CGCACAAAAAGAAGCGATTCAGACGGCTTTGCAATCGCCTATGCTTATTTTAACAGGCGGCCCGGGAACAGGGAAAACGA
CGGTCATTAAGGGCATTGTGGAGCTATATAGTGAGCTTCATGGCGTGTCGATGAACATAAAAGATTATAAAAAGGATGAG
GAGCCGTTTCCCTTTGTGCTTGCTGCGCCGACTGGCCGTGCAGCTAAGCGAATGGCGGAATCTACTGGTCTGCCTGCTGT
GACGATTCATCGGCTGCTCGGTTGGAATGGCAGTGAAGGGTTTGCTCATGATGCAGACAATCCTATTGAGGGGCGAATTG
TGATTATTGATGAGATGTCGATGGTCGACACATGGCTGGCTCATCAATTGTTGAAAGCATTGCCAGAGCATAGTCAGCTC
ATTCTTGTTGGGGATGAAGACCAGTTGCCGTCTGTTGGTCCTGGTCAAGTGCTGAAGGATTTACTAGCTTCAAAAGCTAT
TCCAACGATTGCTCTCCAACATATTTATCGTCAAGCAGACGGTTCTTCGATTATTGAACTTGCTCATGAAATGAAAAAAG
GCCATGTGCCGCATGATGTGGCAAAGCAACAAGTTGATCGTTCTTTTATTCGATGTCAACAGAGCCAAATGGCTGATGTC
ATTAAGCAGGTCGTTCAAAATGCACGTAAAAAGGGGTATAGTTCACGTGACATTCAAGTACTTGCCCCGATGTATAAAGG
TCCAGCTGGGATTGATGTACTGAACAAGATGCTCCAAGAAGTATTAAATGGGGATAGCGAGAAAAAACGTCGTGAGTTGC
AATTTGGTGATGTCGTCTATCGAACAGGTGATAAAGTGTTACAGCTTGTGAATCAGCCTGAAGAAGGTGTTTTCAATGGA
GACATGGGCGAAATTGTAACGATTATATTTGCGAAAGAAAATACCGACCATGTAGATAAAGTTGTCATTTCTTTTGAAGG
CATTGAAGTGACGTATACGAAGCAGGATTTAAACCAAATCACACATGCGTATTGCTGTTCGATACATAAATCACAAGGAA
GCGAGTTTCCAATTGTTATTTTACCTGTTGTGCGAAGCTACTATAGAATGTTACGTCGAAATTTATTGTATACGGCGATT
ACACGCAGCAAGGATTTTCTCATTATATGTGGAGAAGAAGAAGCATTTCGACTTGGAGTGGAACGTAATGATGAAACACA
GCGCCGGACAACATTGCGGGAAAAATTACAGGAAATACATGCAAGAAGCGATACTAAAGTTATTGAAGAAGGTGAATCAT
ACCTCGATCGCTTAATGAATGAGGACCCGATGATTGGCATGGGCGATGTAACTCCGTATCATTTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q9RQG4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.474

100

0.609