Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | M892_RS12425 | Genome accession | NC_022269 |
| Coordinates | 2690030..2690605 (+) | Length | 191 a.a. |
| NCBI ID | WP_012126434.1 | Uniprot ID | A7MXC9 |
| Organism | Vibrio campbellii ATCC BAA-1116 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2685030..2695605
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M892_RS12410 (M892_12450) | oxyR | 2685297..2686205 (+) | 909 | WP_012126437.1 | DNA-binding transcriptional regulator OxyR | - |
| M892_RS12415 (M892_12455) | - | 2686284..2688851 (-) | 2568 | WP_012126436.1 | PBP1A family penicillin-binding protein | - |
| M892_RS12420 (M892_12460) | pilM | 2689030..2690046 (+) | 1017 | WP_041853270.1 | type IV pilus assembly protein PilM | Machinery gene |
| M892_RS12425 (M892_12465) | pilN | 2690030..2690605 (+) | 576 | WP_012126434.1 | PilN domain-containing protein | Machinery gene |
| M892_RS12430 (M892_12470) | pilO | 2690598..2691191 (+) | 594 | WP_012126433.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| M892_RS12435 (M892_12475) | pilP | 2691181..2691696 (+) | 516 | WP_012126432.1 | pilus assembly protein PilP | Machinery gene |
| M892_RS12440 (M892_12480) | pilQ | 2691731..2693479 (+) | 1749 | WP_041853271.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| M892_RS12445 (M892_12485) | aroK | 2693668..2694186 (+) | 519 | WP_010443904.1 | shikimate kinase AroK | - |
| M892_RS12450 (M892_12490) | aroB | 2694218..2695318 (+) | 1101 | WP_012126430.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22300.65 Da Isoelectric Point: 9.3857
>NTDB_id=61963 M892_RS12425 WP_012126434.1 2690030..2690605(+) (pilN) [Vibrio campbellii ATCC BAA-1116]
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGISKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHYIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
MLYHINLLAWRENQREEHRRRFIGLILLGAIAALGVQWGISKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHS
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPEGVYVDKIKMNDYEIEISGISDSTSRLATMLDNMERSAKLLDVDMHYIV
HGKARFGKEFQTFKVSFMFKDASIKGGKQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=61963 M892_RS12425 WP_012126434.1 2690030..2690605(+) (pilN) [Vibrio campbellii ATCC BAA-1116]
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCAGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCTGCCAAGCTTCTGGATGTTGATATGCACTACATTGTA
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA
ATGCTGTATCACATTAACCTTCTTGCCTGGCGTGAAAACCAACGTGAAGAGCATCGTCGTCGTTTTATTGGCTTGATTTT
ACTCGGGGCGATCGCTGCTCTGGGCGTGCAATGGGGGATCAGTAAGTACTACCAATACCAACAAGATCAGCAGCAACAGC
GCTTGGATTATCTCGCTCACTATATCTCTCAACTCGATAAACGTATTGAAGCCATGAAGATAGCAGAGCAAGAGCACAGC
AAAATTCTAGAGCGCTTAAAGACCGTTGAGGGGTTGCAAAATGGGCGCAATAAAACCACTGAGTTTATGAACCTTATGCC
CTCAGTGATCCCTGAAGGCGTCTATGTCGATAAGATCAAAATGAACGACTACGAGATTGAGATCTCGGGTATTTCTGATA
GCACCTCTCGTCTTGCCACCATGCTCGATAATATGGAGCGTTCTGCCAAGCTTCTGGATGTTGATATGCACTACATTGTA
CATGGTAAAGCGCGCTTTGGTAAAGAGTTCCAGACGTTCAAAGTCTCCTTCATGTTTAAAGACGCCTCTATAAAAGGAGG
TAAGCAGCATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
98.429 |
100 |
0.984 |
| pilN | Vibrio cholerae strain A1552 |
59.887 |
92.67 |
0.555 |