Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LIS76_RS17470 Genome accession   NZ_CP085717
Coordinates   3574177..3576549 (-) Length   790 a.a.
NCBI ID   WP_252290965.1    Uniprot ID   -
Organism   Peribacillus asahii strain CMF4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3569177..3581549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS76_RS17455 (LIS76_17510) dtd 3570754..3571194 (-) 441 WP_252290963.1 D-aminoacyl-tRNA deacylase -
  LIS76_RS17460 (LIS76_17515) - 3571207..3573402 (-) 2196 WP_127761487.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LIS76_RS17465 (LIS76_17520) - 3573674..3574186 (-) 513 WP_119117469.1 adenine phosphoribosyltransferase -
  LIS76_RS17470 (LIS76_17525) recJ 3574177..3576549 (-) 2373 WP_252290965.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LIS76_RS17475 (LIS76_17530) secDF 3576693..3578945 (-) 2253 WP_252290967.1 protein translocase subunit SecDF -
  LIS76_RS17480 (LIS76_17535) - 3579138..3579440 (-) 303 WP_252286836.1 post-transcriptional regulator -
  LIS76_RS17485 (LIS76_17540) spoVB 3579571..3581136 (+) 1566 WP_252290970.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89244.44 Da        Isoelectric Point: 5.1117

>NTDB_id=619585 LIS76_RS17470 WP_252290965.1 3574177..3576549(-) (recJ) [Peribacillus asahii strain CMF4]
MLKPKTRWNVQAADSNKITALVEQLHITPLVATLLVNRGLDDVEAARSFLYVKKQTFHDPFLLKDMDKTVHRIQEAIHRG
EKIRIFGDYDADGVTSTTVMMTTLKRLGAHVDFYIPNRFTEGYGPNEMAFRLAASEGVQLLITVDTGIAAVAEAALAREL
GMDYIVTDHHEPGPELPEAFAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLLGENRLI
AAKGIEKMRQTRRPGLVSLMKVANIEQGSLTEESIGFSLAPRLNAAGRLGPADPAVDLLMAEDLLEAAELSEEINELNKE
RQAIVAEAVEEAIREVEEHYPLANNQVLIVGKEGWNPGIVGIVASKLVERYYRPTIVLSYDREKGLAKGSARSIAGFDLF
RNLSTCRELLPHFGGHPMAAGMTLRIDDVPELRMRLNQLAAEQLTAEDFIPVVSLDGAVHIEEASIQTIEEMSLLAPFGV
SNPKPKVLLDSVQLAGIRKIGANQNHLKFQFAEEDKQLDGVGFGLGHYADHIAPHAKVSVIGELSINEWNNMKKPQIFVK
DVAVDHWQLFDYRGKGQVEKWLTEILPTKRKIIIFSAETMKQYPFLQDYPDVMLIQTEQDVERIEGINSYLVLMDLPMSR
EILQKIIRNQQPERIYVHFFHQQDHFLSTMPTRDHFKWFYAFLAKKGSLDLGRYGDDLAAYRGWSRNTIDFISKVFFELD
FVTIDNGLIMLKTNAKKRELTDSISYQRKKEQFELEKELVYSSYQQLFDWFNQELIQEVIDLEEETKLWI

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=619585 LIS76_RS17470 WP_252290965.1 3574177..3576549(-) (recJ) [Peribacillus asahii strain CMF4]
ATGTTAAAGCCAAAAACGCGGTGGAATGTACAAGCCGCTGATTCAAATAAAATTACTGCACTAGTGGAACAGCTTCATAT
TACACCTCTAGTAGCAACGCTATTAGTTAATCGAGGCTTAGATGATGTCGAAGCTGCTCGATCTTTTTTATATGTCAAAA
AACAAACGTTTCATGACCCATTTCTATTAAAAGATATGGATAAAACCGTTCATCGTATACAAGAGGCGATTCACCGTGGC
GAGAAAATTCGCATATTCGGCGATTATGATGCGGATGGTGTCACATCGACAACGGTGATGATGACAACGCTAAAAAGACT
AGGCGCTCACGTAGATTTCTATATTCCCAATCGTTTTACAGAAGGATATGGGCCGAATGAGATGGCTTTTCGTCTTGCTG
CTAGTGAAGGCGTGCAGCTATTAATTACCGTTGATACAGGAATTGCTGCCGTAGCAGAAGCAGCACTTGCCCGTGAGCTT
GGGATGGATTATATTGTGACAGATCATCATGAACCAGGACCAGAGCTTCCAGAAGCATTTGCTATCATTCATCCAAAGTT
AGAAGATAGCAGCTATCCGTTTAAAGAATTAGCTGGAGTTGGGGTAGCATTCAAGCTTGCACATGCTCTGCTTGGAGAAC
TGCCGGAAGACTTACTAGAAATTGCTGCGATTGGAACGATTGCTGATTTAGTACCGTTGCTTGGGGAAAATCGCTTGATT
GCTGCAAAAGGGATTGAAAAGATGCGCCAAACGAGAAGACCAGGTCTCGTTTCTTTAATGAAAGTAGCGAATATTGAGCA
AGGTTCGTTAACGGAAGAATCGATTGGGTTTTCTTTGGCGCCGCGTTTAAATGCAGCCGGACGTTTAGGTCCTGCAGATC
CTGCTGTTGATTTATTAATGGCGGAAGATTTGCTAGAGGCAGCTGAGCTTTCAGAAGAAATTAATGAGCTCAATAAAGAG
CGTCAAGCAATCGTAGCAGAAGCAGTAGAGGAAGCGATTCGTGAAGTAGAAGAACATTATCCACTCGCTAATAATCAGGT
TCTGATTGTTGGGAAAGAGGGATGGAATCCAGGTATTGTAGGGATTGTCGCTTCAAAGCTTGTTGAGCGTTATTATCGAC
CGACAATCGTTCTAAGTTATGATCGAGAAAAAGGTTTAGCAAAAGGATCAGCACGCAGTATTGCTGGATTTGATTTATTT
CGGAATTTATCTACTTGTCGCGAATTATTACCTCATTTCGGAGGTCATCCAATGGCAGCTGGAATGACGTTACGAATTGA
TGATGTGCCCGAATTGCGCATGCGTTTAAATCAATTGGCGGCTGAACAATTAACAGCGGAAGATTTTATTCCTGTAGTGA
GCTTAGATGGAGCCGTACATATTGAAGAGGCTTCCATTCAAACAATTGAGGAAATGAGCTTATTAGCTCCATTTGGTGTC
AGCAATCCTAAACCGAAAGTTTTACTTGATTCTGTTCAACTTGCAGGCATTCGGAAAATCGGTGCCAATCAAAATCATTT
AAAGTTCCAGTTTGCAGAGGAAGATAAGCAGCTTGATGGGGTGGGATTTGGCTTAGGACATTATGCTGATCATATTGCTC
CGCATGCCAAAGTGTCCGTTATTGGAGAACTTTCTATTAATGAGTGGAATAATATGAAAAAGCCGCAAATTTTTGTAAAA
GATGTTGCTGTTGATCATTGGCAGCTATTTGATTATCGTGGTAAAGGGCAAGTGGAAAAGTGGTTAACAGAGATTTTGCC
AACGAAGCGAAAAATCATTATCTTTTCGGCCGAGACGATGAAACAGTATCCGTTTTTGCAAGATTATCCAGATGTGATGT
TGATTCAAACGGAGCAGGATGTAGAGAGGATAGAAGGAATTAATAGCTATTTAGTATTGATGGACCTGCCAATGTCTCGC
GAGATTTTACAGAAAATCATTCGTAATCAACAGCCAGAGCGGATTTATGTTCACTTTTTTCATCAACAAGATCATTTCTT
AAGTACGATGCCAACTCGGGATCATTTTAAATGGTTTTATGCATTTTTAGCGAAAAAAGGGTCGCTCGATTTAGGAAGAT
ATGGAGATGACCTTGCGGCATACCGTGGTTGGTCTCGAAATACAATTGATTTTATTTCTAAGGTGTTTTTTGAATTAGAT
TTTGTTACAATAGATAATGGATTAATTATGCTTAAAACCAATGCGAAAAAACGCGAACTAACTGATTCAATATCGTATCA
ACGAAAGAAAGAGCAATTTGAGCTTGAAAAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATCAAG
AATTAATTCAAGAGGTAATAGACCTTGAGGAGGAAACAAAGCTATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(307-439)

RecJ OB domain (RecJ_OB)

(456-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-771)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.756

98.481

0.539