Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M892_RS09740 Genome accession   NC_022269
Coordinates   2123978..2124703 (+) Length   241 a.a.
NCBI ID   WP_041853255.1    Uniprot ID   -
Organism   Vibrio campbellii ATCC BAA-1116     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2118978..2129703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M892_RS09725 (M892_09745) - 2120082..2122403 (+) 2322 WP_021017918.1 Tex family protein -
  M892_RS09730 (M892_09750) - 2122528..2122992 (-) 465 WP_012126785.1 hypothetical protein -
  M892_RS09735 (M892_09755) bioH 2123129..2123893 (-) 765 WP_005529108.1 pimeloyl-ACP methyl ester esterase BioH -
  M892_RS09740 (M892_09760) comF 2123978..2124703 (+) 726 WP_041853255.1 ComF family protein Machinery gene
  M892_RS09745 (M892_09765) nfuA 2124801..2125385 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  M892_RS09750 (M892_09770) nudE 2125561..2126127 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  M892_RS09755 (M892_09775) cysQ 2126175..2127002 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  M892_RS09760 (M892_09780) - 2127292..2128053 (-) 762 WP_012126783.1 type II secretion system protein N -
  M892_RS09765 (M892_09785) - 2128055..2128546 (-) 492 WP_041853256.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27691.84 Da        Isoelectric Point: 8.2981

>NTDB_id=61955 M892_RS09740 WP_041853255.1 2123978..2124703(+) (comF) [Vibrio campbellii ATCC BAA-1116]
MLSHQWQNIMHRVLSSQCGLCRFPMPHRQTPNLMRWCDSCFDHLTPIERCVRCGLKMTEKESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLSHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=61955 M892_RS09740 WP_041853255.1 2123978..2124703(+) (comF) [Vibrio campbellii ATCC BAA-1116]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATGCCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCACCTCACACCAATTGAGCGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAAAGGAATCACAAGCCGCCACAGAGTGTGGAGAGTGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGACTATGACTTCCCGCTCTCTCAACAAGTACAACGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCTCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

97.51

100

0.975
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment