Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIT37_RS16995 Genome accession   NZ_CP085714
Coordinates   3385304..3387694 (-) Length   796 a.a.
NCBI ID   WP_252286812.1    Uniprot ID   -
Organism   Peribacillus asahii strain CK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3380304..3392694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT37_RS16980 (LIT37_17020) - 3383140..3384216 (-) 1077 WP_252286809.1 AI-2E family transporter -
  LIT37_RS16985 (LIT37_17025) - 3384475..3384711 (-) 237 WP_252286810.1 hypothetical protein -
  LIT37_RS16990 (LIT37_17030) - 3384680..3385168 (-) 489 WP_252286811.1 PRC-barrel domain-containing protein -
  LIT37_RS16995 (LIT37_17035) recD2 3385304..3387694 (-) 2391 WP_252286812.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIT37_RS17000 (LIT37_17040) - 3387732..3388397 (-) 666 WP_252286813.1 tetratricopeptide repeat protein -
  LIT37_RS17005 (LIT37_17045) mnmA 3388491..3389606 (-) 1116 WP_252286814.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIT37_RS17010 (LIT37_17050) - 3389620..3390765 (-) 1146 WP_252286815.1 cysteine desulfurase family protein -
  LIT37_RS17015 (LIT37_17055) - 3390887..3391306 (-) 420 WP_127761470.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 90050.78 Da        Isoelectric Point: 4.8983

>NTDB_id=619538 LIT37_RS16995 WP_252286812.1 3385304..3387694(-) (recD2) [Peribacillus asahii strain CK1]
MSQQEALDLFSEEKQFMKGRHLVTIFHNEENMYSVVRIRLDETNLNYDEQEAVVTGYFPRIHEHETYIFYGVLKEHPRFG
LQFQVNHFRKDLPQSKEGIVAYLSGDMFKGIGKKTAESIVETLGENAISKILAQPSVLDNIPRLSGEKAKALYDTLLENE
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTVSIIQSNPYKLVEDIEGIGFGRADELGFQLGISGGHPDRIKAACLYCLDT
QCMQDGHVYMEAEELLESVQRLLEENKRDVIEFTNISSEIIKLEAERKIVVEETRIYLPALYFSEKGIVMNIQRLLQQTE
YEDQFPESEFLLALGELEERLGVTYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYSELHGVSMNIKDYKKDE
EPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFAHDADNPIEGRIVIIDEMSMVDTWLAHQLLKALPEHSQL
IVVGDEDQLPSVGPGQVLKDLLASEAIPTIALQHIYRQADGSSIIELAHEMKKGHVPHDVAKQQVDRSFIRCQQSQMADV
IKQVVQNARKKGYSSRDIQVLAPMYKGPAGIDILNKMLQEVLNGDSEKKRRELQFGDVVYRTGDKVLQLVNQPEEGVFNG
DMGEIVTIIFAKENTDHVDKVVISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVRSYYRMLRRNLLYTAI
TRSKDFLIICGEEEAFRLGVERNDETQRRTTLREKLQEIHAGSDTKVIEEGESYLDRLMNEDPMIGMGDVTPYHFM

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=619538 LIT37_RS16995 WP_252286812.1 3385304..3387694(-) (recD2) [Peribacillus asahii strain CK1]
TTGAGTCAACAAGAGGCTTTAGATTTGTTTTCGGAAGAGAAGCAGTTTATGAAAGGGCGGCACTTAGTGACGATTTTTCA
TAATGAGGAAAATATGTATTCTGTTGTTCGGATTCGCTTGGATGAAACAAATTTGAATTATGATGAGCAGGAAGCTGTCG
TGACTGGTTATTTCCCACGTATTCATGAGCATGAAACGTATATCTTTTACGGAGTATTGAAGGAGCATCCTCGCTTTGGT
CTACAGTTTCAAGTTAATCATTTTCGCAAAGATTTGCCACAGTCGAAGGAAGGTATTGTGGCTTATTTATCCGGCGATAT
GTTTAAAGGAATTGGGAAGAAGACGGCAGAAAGCATTGTGGAAACACTTGGTGAAAATGCAATTTCAAAAATTTTAGCGC
AGCCTTCCGTACTGGATAATATTCCGCGTCTGTCAGGAGAGAAAGCAAAAGCTTTATATGATACATTGCTTGAAAACGAA
GGTCTTGAGCAAGTGATGATTGCGCTGAATCAATATGGTTTTGGACCGCAGCTTTCGATGAAAATTTATCAAATGTATAA
ACAGGATACGGTTTCTATTATTCAAAGTAATCCATATAAGCTTGTAGAGGATATTGAGGGAATTGGTTTTGGACGGGCGG
ATGAACTTGGATTTCAGCTAGGCATTTCCGGGGGGCATCCAGACCGCATTAAAGCGGCTTGCCTATATTGCCTTGACACG
CAATGCATGCAGGATGGACATGTCTATATGGAGGCAGAGGAATTATTAGAGTCTGTTCAACGTTTATTGGAAGAAAATAA
GCGTGATGTCATTGAATTTACGAATATTTCCTCAGAAATAATCAAATTAGAAGCGGAAAGAAAGATTGTTGTCGAGGAAA
CACGTATTTATTTGCCTGCTTTGTACTTCTCGGAAAAAGGAATTGTCATGAATATTCAACGGCTTCTCCAACAAACAGAG
TATGAAGACCAGTTTCCAGAATCGGAGTTTTTATTAGCGCTTGGTGAATTGGAGGAGCGTCTTGGTGTGACGTACGCTCC
CGCACAAAAAGAAGCGATTCAGACGGCTTTGCAATCGCCTATGCTTATTTTAACCGGCGGCCCGGGAACAGGAAAAACGA
CGGTCATTAAGGGCATTGTGGAGCTATATAGTGAGCTTCATGGCGTGTCGATGAACATAAAAGATTATAAAAAGGATGAG
GAGCCGTTTCCCTTTGTGCTTGCTGCGCCAACTGGCCGCGCAGCTAAGCGAATGGCGGAATCTACTGGTCTGCCGGCTGT
AACAATTCATCGGCTGCTCGGTTGGAATGGCAGTGAAGGGTTTGCACATGATGCAGACAATCCTATTGAGGGGCGCATTG
TGATTATTGATGAGATGTCGATGGTCGACACATGGCTGGCTCATCAATTGTTAAAAGCATTGCCAGAGCATAGTCAGCTC
ATTGTTGTTGGGGATGAAGACCAGCTGCCTTCTGTTGGCCCTGGGCAGGTGCTGAAGGATTTACTAGCTTCAGAAGCTAT
TCCAACGATTGCTCTCCAACATATTTATCGTCAAGCCGACGGTTCTTCGATTATTGAACTTGCTCATGAAATGAAAAAAG
GCCATGTGCCGCATGATGTGGCAAAGCAACAAGTTGATCGTTCTTTTATTCGATGTCAACAGAGCCAAATGGCTGATGTC
ATTAAGCAAGTTGTTCAAAATGCACGTAAAAAGGGGTATAGTTCACGTGATATTCAAGTGCTTGCCCCAATGTATAAAGG
CCCAGCTGGGATTGATATACTGAACAAGATGCTCCAAGAAGTATTAAATGGAGATAGCGAGAAAAAACGTCGTGAGTTGC
AATTTGGTGATGTTGTCTATCGAACAGGTGATAAAGTGTTACAGCTTGTGAATCAGCCTGAAGAAGGTGTTTTTAATGGA
GACATGGGCGAGATTGTAACGATTATATTTGCTAAAGAAAATACCGATCATGTAGATAAAGTTGTCATTTCCTTTGAAGG
CATTGAAGTGACGTACACGAAGCAGGATTTAAATCAAATCACACACGCGTATTGCTGTTCCATACATAAATCACAAGGAA
GCGAGTTCCCAATTGTTATTTTACCTGTTGTTCGAAGCTACTATAGAATGTTACGCCGAAATTTATTATATACGGCGATT
ACACGAAGCAAGGATTTTCTCATTATATGCGGAGAAGAAGAAGCATTTCGACTTGGGGTGGAACGTAACGATGAAACACA
GCGCCGGACAACATTGCGGGAAAAATTACAGGAAATACATGCAGGAAGCGATACTAAAGTTATTGAAGAAGGTGAGTCAT
ACCTCGATCGCTTAATGAATGAGGACCCGATGATTGGCATGGGCGATGTAACTCCGTATCATTTTATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(682-730)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-665)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.474

100

0.609