Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LIS82_RS20020 Genome accession   NZ_CP085712
Coordinates   3839613..3841979 (-) Length   788 a.a.
NCBI ID   WP_056685870.1    Uniprot ID   A0A0Q3TBP5
Organism   Cytobacillus solani strain F27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3834613..3846979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS20005 (LIS82_20060) dtd 3836227..3836667 (-) 441 WP_053477135.1 D-aminoacyl-tRNA deacylase -
  LIS82_RS20010 (LIS82_20065) - 3836680..3838878 (-) 2199 WP_252239239.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LIS82_RS20015 (LIS82_20070) - 3839110..3839622 (-) 513 WP_053477137.1 adenine phosphoribosyltransferase -
  LIS82_RS20020 (LIS82_20075) recJ 3839613..3841979 (-) 2367 WP_056685870.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LIS82_RS20025 (LIS82_20080) - 3842247..3843155 (-) 909 WP_053477139.1 cation diffusion facilitator family transporter -
  LIS82_RS20030 (LIS82_20085) secDF 3843280..3845541 (-) 2262 WP_056685877.1 protein translocase subunit SecDF -
  LIS82_RS20035 (LIS82_20090) - 3845761..3846057 (-) 297 WP_053477141.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88661.47 Da        Isoelectric Point: 5.0349

>NTDB_id=619496 LIS82_RS20020 WP_056685870.1 3839613..3841979(-) (recJ) [Cytobacillus solani strain F27]
MLHSKTRWIVRNSDEEKENLLVQELNITPLVASLLVNRGLETPELARHFLFDQKHEFHDPFLLTDMNAAVSRIKEGIENQ
EAILIFGDYDADGVTSTTVMMKTLQELGANVEFYIPNRFTEGYGPNIPAFQHAAEAGIKLIITVDTGIAAVNEAKAAKEL
GLDLIITDHHEPGPELPEALAIIHPKLENSEYPFRDLAGVGVAFKLAHALLGRVPEHLLEIAAIGTIADLVSLKGENRLI
VKKGIKKLQLTSNVGLKALLKLNKVEPNSINEETIGFLIAPRLNAAGRLESADPAVDLLLTEDSLEAEAIAEEIEQLNKD
RKSLVNEITEQAIREVEEKYPLTDNAVLVIGKEGWNAGVIGIVASKLVDKFYRPAIVLSYDVEKGLAKGSARSIAGFDLF
KNLSDCREILPHFGGHPMAAGMTLKLDDVNELRSRLNTAAKDQLSEEDFIPVTQLDGEIALHDIHLSSLEELQMLSPYGM
DNPKPKIMIKNANISAMRKIGSDQNHLKMTIENDGHTLDGVGFGLGSLFEHISPSSQISVIGELSINEWNNIRKPQMFLQ
DIAIDAWQLFDVRGVKRLESLVELIPKDRSKWIVFNQENMSKFQRYTNDHLITVSSEEEASALFIEKENVILIDLPDSKE
ILAAVFAGKKPARVYAHFYNEKDAYFSTIPTRDHFKWFYALLVKKGPFDLRKYGDDIAKFKGWSRQTIDFMSKVFFELDF
VKIENGFISVNKATQKRDLTDSLTYQKVLAQYTLERDMVYSSYQQLKRWFDEVIQGSVKYEEEMKEWT

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=619496 LIS82_RS20020 WP_056685870.1 3839613..3841979(-) (recJ) [Cytobacillus solani strain F27]
ATGTTACATTCAAAAACACGATGGATTGTTCGGAATTCAGATGAAGAAAAGGAAAATCTACTTGTACAAGAATTAAATAT
AACGCCTCTCGTGGCTTCGCTCCTTGTTAATCGTGGATTAGAAACTCCGGAATTAGCACGACATTTTTTATTTGATCAAA
AGCATGAATTTCACGATCCTTTTTTATTAACAGATATGAATGCTGCGGTATCAAGAATAAAAGAGGGAATCGAGAATCAG
GAAGCTATATTAATATTCGGTGATTATGACGCAGATGGTGTAACAAGTACGACTGTGATGATGAAGACTCTTCAAGAGCT
TGGTGCGAATGTAGAATTTTACATACCAAACCGCTTTACAGAAGGGTATGGACCAAATATACCAGCTTTTCAGCATGCAG
CAGAAGCAGGTATTAAACTGATTATTACCGTTGATACAGGCATAGCTGCTGTAAATGAGGCGAAGGCTGCCAAAGAGCTT
GGGCTTGATCTTATTATTACTGACCATCATGAACCAGGTCCTGAGTTGCCTGAAGCATTGGCAATCATTCACCCGAAACT
TGAAAATAGCGAATATCCTTTCCGTGATTTAGCTGGTGTAGGTGTAGCATTTAAATTAGCCCATGCTCTGTTAGGCAGGG
TGCCTGAACATTTGCTTGAAATTGCTGCAATCGGAACAATTGCAGATCTTGTATCTCTAAAAGGAGAAAACCGCTTAATT
GTTAAAAAAGGGATTAAAAAGCTTCAATTGACTTCAAATGTCGGTTTAAAAGCATTATTAAAATTAAATAAAGTAGAACC
CAATTCAATAAATGAAGAAACAATTGGTTTTCTAATTGCTCCTCGCTTGAATGCGGCAGGAAGATTGGAAAGTGCTGACC
CTGCAGTTGATTTGCTGTTAACGGAAGATAGTCTTGAAGCTGAAGCAATTGCAGAAGAAATTGAGCAATTAAATAAGGAT
CGAAAGTCTTTAGTCAATGAAATTACAGAGCAGGCCATTCGTGAAGTTGAAGAAAAATATCCATTGACTGATAATGCTGT
TCTTGTCATTGGAAAAGAAGGCTGGAATGCTGGGGTAATTGGAATTGTCGCTTCAAAGCTCGTAGATAAATTCTATCGGC
CTGCCATTGTACTAAGCTATGATGTAGAAAAGGGTCTTGCTAAAGGATCTGCTAGGAGTATAGCAGGTTTTGACCTTTTT
AAAAATCTGTCAGATTGCAGAGAGATTTTGCCTCATTTTGGCGGACATCCGATGGCAGCAGGGATGACATTGAAACTTGA
TGATGTGAATGAGCTTCGGAGCAGACTCAATACTGCTGCAAAAGATCAGTTATCAGAGGAGGATTTTATTCCTGTAACCC
AACTGGATGGGGAAATCGCATTACATGATATTCATTTGTCTTCTTTAGAAGAACTGCAAATGCTCTCTCCATATGGAATG
GATAACCCAAAACCAAAAATAATGATTAAAAATGCCAATATATCTGCAATGCGTAAGATTGGTTCGGATCAGAATCATTT
GAAAATGACGATTGAAAATGATGGTCACACATTAGATGGAGTCGGTTTTGGACTTGGTTCATTATTCGAACATATTTCTC
CAAGTTCGCAAATTTCGGTTATCGGGGAATTATCGATTAATGAATGGAATAATATTCGCAAACCGCAAATGTTTCTCCAA
GATATAGCTATTGATGCATGGCAGCTATTTGATGTTAGGGGAGTAAAGCGCCTTGAAAGTTTAGTCGAGCTCATCCCGAA
GGATCGTTCGAAATGGATTGTATTTAATCAAGAGAATATGAGTAAATTTCAAAGATATACAAACGATCATTTAATAACGG
TAAGTTCAGAGGAGGAAGCCTCTGCACTATTCATAGAGAAAGAAAATGTGATTTTGATCGATCTTCCTGACTCTAAGGAA
ATATTGGCTGCAGTATTTGCCGGAAAAAAGCCAGCTAGAGTGTATGCGCATTTTTATAATGAAAAGGATGCGTATTTTAG
TACGATTCCAACTAGAGATCATTTCAAATGGTTCTATGCCTTATTAGTAAAGAAAGGACCTTTTGATCTTAGAAAATATG
GAGATGACATTGCTAAATTTAAGGGCTGGAGCAGACAAACAATTGACTTCATGTCAAAGGTGTTTTTTGAACTCGATTTT
GTTAAAATAGAAAATGGATTCATTTCAGTTAATAAAGCTACACAAAAACGTGATTTAACTGATTCATTAACATACCAGAA
GGTGCTGGCACAGTATACACTTGAAAGGGATATGGTGTATTCTTCCTATCAGCAATTAAAAAGATGGTTTGACGAAGTGA
TCCAAGGTTCTGTGAAATATGAGGAGGAAATGAAAGAATGGACTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3TBP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.287

99.619

0.551