Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIS82_RS19910 Genome accession   NZ_CP085712
Coordinates   3815657..3818065 (-) Length   802 a.a.
NCBI ID   WP_053477118.1    Uniprot ID   A0A0Q3VIL4
Organism   Cytobacillus solani strain F27     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3810657..3823065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS82_RS19885 (LIS82_19940) - 3813338..3814420 (-) 1083 WP_053477115.1 AI-2E family transporter -
  LIS82_RS19890 (LIS82_19945) - 3814506..3814640 (-) 135 WP_075209195.1 YrzQ family protein -
  LIS82_RS19895 (LIS82_19950) - 3814666..3814857 (-) 192 WP_053477116.1 hypothetical protein -
  LIS82_RS19900 (LIS82_19955) - 3814870..3815343 (-) 474 WP_053477117.1 PRC-barrel domain-containing protein -
  LIS82_RS19905 (LIS82_19960) - 3815439..3815606 (-) 168 WP_172797662.1 hypothetical protein -
  LIS82_RS19910 (LIS82_19965) recD2 3815657..3818065 (-) 2409 WP_053477118.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIS82_RS19915 (LIS82_19970) - 3818103..3818765 (-) 663 WP_053477119.1 tetratricopeptide repeat protein -
  LIS82_RS19920 (LIS82_19975) mnmA 3819156..3820271 (-) 1116 WP_053477120.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIS82_RS19925 (LIS82_19980) - 3820303..3821445 (-) 1143 WP_053477121.1 cysteine desulfurase family protein -
  LIS82_RS19930 (LIS82_19985) - 3821600..3822019 (-) 420 WP_053477122.1 Rrf2 family transcriptional regulator -
  LIS82_RS19935 (LIS82_19990) - 3822019..3822699 (-) 681 WP_142108618.1 YitT family protein -

Sequence

Protein


Download         Length: 802 a.a.        Molecular weight: 90565.37 Da        Isoelectric Point: 4.8744

>NTDB_id=619495 LIS82_RS19910 WP_053477118.1 3815657..3818065(-) (recD2) [Cytobacillus solani strain F27]
MEKQDSLDLFSEQGKYIKGKHLVTIFHNEQNLYTVLRIRVEETNDQYEDKEAVVTGYFPKMHEQETYIFYGELKDHPKFG
VQFQANHFRKDIPQTKQGVVNYLSSELFKGIGKKTAESIVETLGENAISRILNQPSLLDQIPKLAPEKAKTLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMKIYQAYKDQTVEVVQNNPYKLVEDIEGIGFGRADELGYQLGISGSHPDRIRAACLYILET
ESMQAGHVYTEARVLLPSVKRLLEENKRDGIEFESISNEIVKLGEEGKIMIEEQRLYVPSLYFSEKGLVTNIKRVLRQTQ
YEDQFPESEFLLALGKLEERLKVQYAPTQKDAIQTALMSPMLILTGGPGTGKTTVIKGIVELYADLHGCSLDPKDYKKEE
PFPFILAAPTGRAAKRMTESTGLPALTIHRLLGWNGTEGFDRHEENPLEGKIIIVDETSMVDIWLANQLFKAIPENMQVI
LVGDEDQLPSVGPGQVLKDLLSSERIPTVKLTDIYRQAEGSSIIELAHEMKKGRLPANISAQQADRSFIQCNPGQIAAAI
EKVVLNAKKKGYTAKDIQVLAPMYKGPAGIDRLNEIIQEIFNPNDGSRKELAFGDVKYRIGDKVLQLVNQPENHVFNGDM
GEIVSIFYAKENTEKQDMVVVSFDGAEATYTRQDLTQITHAYCCSVHKSQGSEFPIVILPVVKSYFRMLRRNLLYTAITR
SKQFLILCGEEEALRIGVERADEQSRLTSLTDKLKEAISEQIPAEKEFDGESLTYEEEIMNVDPLIGMENITPYDFMEID
NT

Nucleotide


Download         Length: 2409 bp        

>NTDB_id=619495 LIS82_RS19910 WP_053477118.1 3815657..3818065(-) (recD2) [Cytobacillus solani strain F27]
ATGGAGAAACAGGACTCCTTAGACTTGTTTTCCGAACAAGGAAAATACATAAAGGGAAAGCATCTTGTAACCATCTTTCA
TAATGAGCAAAACCTATACACCGTTTTGCGTATTCGGGTAGAGGAAACGAATGATCAGTATGAGGATAAGGAAGCAGTGG
TAACTGGATATTTTCCGAAGATGCATGAACAGGAAACGTATATTTTTTATGGGGAATTGAAAGATCACCCGAAATTTGGA
GTCCAGTTTCAGGCCAATCATTTTCGTAAGGATATCCCTCAGACGAAACAAGGTGTTGTCAATTATTTATCAAGCGAGCT
GTTTAAAGGTATTGGAAAAAAGACGGCTGAAAGCATCGTTGAAACATTAGGGGAAAATGCGATATCAAGAATTCTAAACC
AGCCATCCTTGCTTGATCAAATTCCAAAACTTGCTCCGGAAAAAGCAAAAACCTTATATGATACATTAATGGAGCATCAA
GGCCTTGAACAGGCAATGATCGCTTTAAATCAATATGGGTTTGGTCCACAGCTTTCCATGAAGATTTATCAAGCTTATAA
AGATCAAACGGTTGAGGTTGTTCAAAATAATCCGTATAAGCTCGTCGAGGATATTGAAGGAATTGGTTTTGGCAGAGCGG
ATGAACTAGGCTATCAGCTTGGGATTTCAGGGAGCCATCCAGATCGCATTAGAGCGGCTTGCTTATACATACTTGAAACG
GAAAGCATGCAGGCCGGGCATGTGTACACAGAGGCAAGAGTGCTATTGCCTAGTGTAAAAAGGCTTCTTGAAGAAAATAA
ACGTGATGGTATTGAGTTCGAAAGCATTTCTAATGAAATTGTAAAGCTTGGGGAAGAAGGAAAAATAATGATCGAAGAGC
AACGATTGTATGTGCCTTCCCTTTATTTTTCTGAAAAAGGACTAGTAACCAACATAAAGCGGGTATTAAGGCAAACACAA
TATGAAGATCAGTTTCCTGAGTCAGAATTTCTGCTTGCATTAGGAAAACTAGAAGAGCGATTGAAGGTACAGTATGCGCC
GACTCAAAAAGATGCCATCCAAACGGCTTTAATGTCGCCTATGCTAATATTAACAGGTGGTCCAGGTACGGGAAAGACAA
CAGTTATTAAAGGGATTGTTGAGTTATATGCGGACTTGCATGGCTGCTCATTAGACCCGAAGGATTATAAAAAGGAAGAA
CCTTTTCCGTTTATCTTAGCAGCTCCGACTGGTCGAGCCGCCAAAAGAATGACGGAGTCAACAGGCTTGCCTGCCTTAAC
GATTCATAGACTTCTTGGATGGAATGGGACAGAAGGATTTGATCGGCACGAAGAAAATCCATTAGAGGGTAAAATTATCA
TTGTTGATGAAACATCCATGGTTGATATTTGGCTTGCCAATCAGCTCTTTAAAGCAATTCCGGAAAATATGCAAGTCATT
TTAGTAGGGGATGAGGATCAGCTGCCTTCAGTTGGTCCTGGGCAGGTGTTAAAGGACTTACTTAGTTCAGAACGAATCCC
AACGGTTAAATTAACGGATATTTACAGGCAGGCAGAAGGTTCATCCATTATTGAGCTTGCACATGAAATGAAAAAAGGCA
GGCTCCCAGCGAATATTTCTGCCCAGCAGGCTGATCGTTCCTTTATTCAATGCAATCCTGGACAAATAGCAGCTGCGATC
GAAAAAGTAGTTTTAAATGCAAAGAAAAAGGGTTATACAGCAAAGGATATTCAAGTGCTAGCACCGATGTATAAGGGACC
TGCTGGAATTGATCGTTTAAATGAAATCATCCAGGAAATTTTTAATCCAAATGACGGATCGCGAAAAGAATTAGCTTTCG
GTGACGTAAAATACCGAATTGGTGATAAAGTTCTTCAACTAGTGAATCAGCCAGAAAATCATGTTTTTAATGGCGATATG
GGTGAAATTGTTTCGATTTTTTATGCGAAAGAGAACACGGAGAAACAAGACATGGTTGTCGTGTCTTTTGACGGTGCCGA
AGCAACCTATACTCGTCAGGATTTAACTCAAATTACCCACGCGTATTGCTGCTCTGTACATAAATCGCAGGGAAGTGAAT
TCCCTATTGTGATTCTTCCCGTTGTGAAGAGTTATTTTCGAATGCTGCGAAGAAACTTGCTTTATACCGCCATCACACGC
AGTAAGCAGTTTCTTATCCTATGTGGGGAAGAAGAAGCATTGAGGATAGGTGTCGAAAGAGCAGACGAGCAATCCCGATT
AACAAGTCTTACTGATAAACTTAAAGAAGCGATTTCAGAACAAATTCCCGCAGAAAAAGAATTTGATGGTGAATCTTTAA
CTTATGAAGAGGAAATAATGAATGTTGACCCGTTAATCGGGATGGAAAATATAACGCCGTATGATTTTATGGAAATAGAT
AATACCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-663)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q3VIL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.317

99.252

0.628