Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   LJF28_RS07515 Genome accession   NZ_CP085529
Coordinates   1661079..1661732 (-) Length   217 a.a.
NCBI ID   WP_027374733.1    Uniprot ID   -
Organism   Chryseobacterium indologenes strain 742     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1656079..1666732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJF28_RS07500 (LJF28_07500) der 1658133..1659443 (+) 1311 WP_027374736.1 ribosome biogenesis GTPase Der -
  LJF28_RS07505 (LJF28_07505) upp 1659598..1660248 (+) 651 WP_098971885.1 uracil phosphoribosyltransferase -
  LJF28_RS07510 (LJF28_07510) - 1660250..1660936 (-) 687 WP_098971884.1 alpha/beta fold hydrolase -
  LJF28_RS07515 (LJF28_07515) comF 1661079..1661732 (-) 654 WP_027374733.1 ComF family protein Machinery gene
  LJF28_RS07520 (LJF28_07520) - 1661820..1663298 (-) 1479 WP_061085150.1 helix-turn-helix domain-containing protein -
  LJF28_RS07525 (LJF28_07525) aceB 1663425..1664999 (+) 1575 WP_098971882.1 malate synthase A -
  LJF28_RS07530 (LJF28_07530) aceA 1665119..1666399 (+) 1281 WP_061085148.1 isocitrate lyase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25454.48 Da        Isoelectric Point: 8.0805

>NTDB_id=618842 LJF28_RS07515 WP_027374733.1 1661079..1661732(-) (comF) [Chryseobacterium indologenes strain 742]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=618842 LJF28_RS07515 WP_027374733.1 1661079..1661732(-) (comF) [Chryseobacterium indologenes strain 742]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTTGAAAACAATCCTATCCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCCGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACCGTTAACACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAATAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.389

99.539

0.512