Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LIT31_RS17260 Genome accession   NZ_CP085514
Coordinates   3629369..3631744 (-) Length   791 a.a.
NCBI ID   WP_252278080.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain KF19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3624369..3636744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT31_RS17245 (LIT31_17315) dtd 3625890..3626333 (-) 444 WP_053535817.1 D-aminoacyl-tRNA deacylase -
  LIT31_RS17250 (LIT31_17320) - 3626349..3628547 (-) 2199 WP_034308787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LIT31_RS17255 (LIT31_17325) - 3628866..3629378 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  LIT31_RS17260 (LIT31_17330) recJ 3629369..3631744 (-) 2376 WP_252278080.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LIT31_RS17265 (LIT31_17335) secDF 3631890..3634151 (-) 2262 WP_252278081.1 protein translocase subunit SecDF -
  LIT31_RS17270 (LIT31_17340) - 3634348..3634653 (-) 306 WP_034308797.1 post-transcriptional regulator -
  LIT31_RS17275 (LIT31_17345) spoVB 3634824..3636386 (+) 1563 WP_252278082.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89094.56 Da        Isoelectric Point: 4.7543

>NTDB_id=618779 LIT31_RS17260 WP_252278080.1 3629369..3631744(-) (recJ) [Peribacillus frigoritolerans strain KF19]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVDEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSTYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSANLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEELNEEDFTPITNLDGATTLAEVSVQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDDEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIEKELDAEQLDCFEGHLVFMDMPPS
REYLKRAVANKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=618779 LIT31_RS17260 WP_252278080.1 3629369..3631744(-) (recJ) [Peribacillus frigoritolerans strain KF19]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCCGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCGATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGACGGCGTGACATCGACCACAGTGATGATGACGGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGTTTTACAGAAGGATATGGTCCGAACCCGATGGCATTCCGCCTTGCAG
CCGAGCAAGGTGTGAAGGTATTGATAACCGTCGATACCGGAATCTCAGCAGTCGATGAAGCGAAGCTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACCGATCACCATGAACCGGGACCGCAACTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGACAGTACCTATCCATTTAAAGACCTTGCCGGAGTAGGGGTCGCATTTAAGCTTGCACACGCCTTGCTCGGGGAAT
TGCCTGAGGATTTGCTTGAAATAGCGGCAATCGGCACGATAGCGGATTTAGTGCCCTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCACCGAGGATAAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCTGCAAATCTGGAAGAAGCAATGGAACTTGCTAATGAAATCAACGATATCAATAAAGAG
CGTCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTCGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CCACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCCCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGTCGTGAAATGCTGCCTCATTTCGGTGGACATCCCATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCGAAGGAAGAACTGAACGAAGAGGATTTCACACCGATTACAA
ACTTGGACGGTGCTACGACTTTAGCTGAAGTTTCCGTTCAAACGATTCAGGAAATGAGTTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAACTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGATGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCGATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAAAGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGCCATTTGGTATTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGCGGTTGCCAATAAGAACCCTTCCCGTATCTACGCTCACCTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGCGATGACTTAGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.729

100

0.549