Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HQJ03_RS18340 Genome accession   NZ_CP085510
Coordinates   3619269..3620048 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain HD1.4B     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614269..3625048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQJ03_RS18315 (HQJ03_018315) uppS 3615018..3615794 (-) 777 WP_000971296.1 isoprenyl transferase -
  HQJ03_RS18320 (HQJ03_018320) frr 3615880..3616437 (-) 558 WP_000531501.1 ribosome recycling factor -
  HQJ03_RS18325 (HQJ03_018325) pyrH 3616440..3617162 (-) 723 WP_000042668.1 UMP kinase -
  HQJ03_RS18330 (HQJ03_018330) tsf 3617229..3618116 (-) 888 WP_001018578.1 translation elongation factor Ts -
  HQJ03_RS18335 (HQJ03_018335) rpsB 3618220..3618921 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  HQJ03_RS18340 (HQJ03_018340) codY 3619269..3620048 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HQJ03_RS18345 (HQJ03_018345) hslU 3620126..3621517 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  HQJ03_RS18350 (HQJ03_018350) hslV 3621540..3622082 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  HQJ03_RS18355 (HQJ03_018355) xerC 3622125..3623024 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  HQJ03_RS18360 (HQJ03_018360) trmFO 3623090..3624394 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=618729 HQJ03_RS18340 WP_000421290.1 3619269..3620048(-) (codY) [Bacillus cereus strain HD1.4B]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=618729 HQJ03_RS18340 WP_000421290.1 3619269..3620048(-) (codY) [Bacillus cereus strain HD1.4B]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCGGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459