Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   NW342_RS29015 Genome accession   NZ_CP102944
Coordinates   6199882..6200406 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6194882..6205406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW342_RS29000 (NW342_29000) aroB 6196010..6197116 (-) 1107 WP_033989914.1 3-dehydroquinate synthase -
  NW342_RS29005 (NW342_29005) aroK 6197166..6197684 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NW342_RS29010 (NW342_29010) pilQ 6197696..6199828 (-) 2133 WP_033989912.1 type 4a pilus secretin PilQ Machinery gene
  NW342_RS29015 (NW342_29015) comL/pilP 6199882..6200406 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NW342_RS29020 (NW342_29020) pilO 6200403..6201026 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  NW342_RS29025 (NW342_29025) pilN 6201023..6201619 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  NW342_RS29030 (NW342_29030) pilM 6201619..6202683 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NW342_RS29035 (NW342_29035) - 6202868..6205339 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=618662 NW342_RS29015 WP_003116136.1 6199882..6200406(-) (comL/pilP) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=618662 NW342_RS29015 WP_003116136.1 6199882..6200406(-) (comL/pilP) [Pseudomonas aeruginosa strain SCAID TCT1-2022 (325)]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362