Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   HQN47_RS08150 Genome accession   NZ_CP085504
Coordinates   1600347..1601126 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BP1.2A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1595347..1606126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN47_RS08130 (HQN47_008130) trmFO 1596034..1597341 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  HQN47_RS08135 (HQN47_008135) xerC 1597411..1598328 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  HQN47_RS08140 (HQN47_008140) hslV 1598344..1598889 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  HQN47_RS08145 (HQN47_008145) hslU 1598906..1600309 (+) 1404 WP_007409775.1 HslU--HslV peptidase ATPase subunit -
  HQN47_RS08150 (HQN47_008150) codY 1600347..1601126 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  HQN47_RS08155 (HQN47_008155) flgB 1601480..1601869 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  HQN47_RS08160 (HQN47_008160) flgC 1601869..1602321 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  HQN47_RS08165 (HQN47_008165) fliE 1602332..1602652 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  HQN47_RS08170 (HQN47_008170) fliF 1602695..1604305 (+) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  HQN47_RS08175 (HQN47_008175) fliG 1604318..1605334 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  HQN47_RS08180 (HQN47_008180) fliH 1605327..1606082 (+) 756 WP_023356896.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=618537 HQN47_RS08150 WP_003154263.1 1600347..1601126(+) (codY) [Bacillus velezensis strain BP1.2A]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=618537 HQN47_RS08150 WP_003154263.1 1600347..1601126(+) (codY) [Bacillus velezensis strain BP1.2A]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCCGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAATGCGCTGAGAAAGCTGGAAAGCGCAGGTGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATCGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471