Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FHQ13_RS06035 Genome accession   NZ_CP085501
Coordinates   1213484..1214263 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain A24     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1188188..1249950 1213484..1214263 within 0


Gene organization within MGE regions


Location: 1188188..1249950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHQ13_RS05925 (FHQ13_005925) - 1188759..1189658 (-) 900 WP_000868224.1 polysaccharide deacetylase family protein -
  FHQ13_RS05930 (FHQ13_005930) pnp 1189812..1191950 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  FHQ13_RS05935 (FHQ13_005935) rpsO 1192111..1192380 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  FHQ13_RS05940 (FHQ13_005940) ribF 1192481..1193452 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  FHQ13_RS05945 (FHQ13_005945) truB 1193496..1194419 (-) 924 WP_000399350.1 tRNA pseudouridine(55) synthase TruB -
  FHQ13_RS05950 (FHQ13_005950) rbfA 1194506..1194862 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  FHQ13_RS05955 (FHQ13_005955) - 1194878..1195159 (-) 282 WP_000582363.1 DUF503 family protein -
  FHQ13_RS05960 (FHQ13_005960) infB 1195156..1197216 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  FHQ13_RS05965 (FHQ13_005965) - 1197221..1197532 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  FHQ13_RS05970 (FHQ13_005970) - 1197533..1197805 (-) 273 WP_000071127.1 YlxR family protein -
  FHQ13_RS05975 (FHQ13_005975) nusA 1197817..1198923 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  FHQ13_RS05980 (FHQ13_005980) rimP 1198941..1199411 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  FHQ13_RS05985 (FHQ13_005985) - 1199748..1204049 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  FHQ13_RS05990 (FHQ13_005990) - 1204174..1205874 (-) 1701 WP_102955949.1 proline--tRNA ligase -
  FHQ13_RS05995 (FHQ13_005995) rseP 1205984..1207240 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  FHQ13_RS06000 (FHQ13_006000) dxr 1207258..1208400 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  FHQ13_RS06005 (FHQ13_006005) cdsA 1208424..1209215 (-) 792 WP_000813594.1 phosphatidate cytidylyltransferase -
  FHQ13_RS06010 (FHQ13_006010) uppS 1209233..1210009 (-) 777 WP_000971296.1 isoprenyl transferase -
  FHQ13_RS06015 (FHQ13_006015) frr 1210095..1210652 (-) 558 WP_000531501.1 ribosome recycling factor -
  FHQ13_RS06020 (FHQ13_006020) pyrH 1210655..1211377 (-) 723 WP_139848857.1 UMP kinase -
  FHQ13_RS06025 (FHQ13_006025) tsf 1211444..1212331 (-) 888 WP_001018578.1 translation elongation factor Ts -
  FHQ13_RS06030 (FHQ13_006030) rpsB 1212435..1213136 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  FHQ13_RS06035 (FHQ13_006035) codY 1213484..1214263 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FHQ13_RS06040 (FHQ13_006040) hslU 1214341..1215732 (-) 1392 WP_000550078.1 ATP-dependent protease ATPase subunit HslU -
  FHQ13_RS06045 (FHQ13_006045) hslV 1215755..1216297 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FHQ13_RS06050 (FHQ13_006050) xerC 1216340..1217239 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  FHQ13_RS06055 (FHQ13_006055) trmFO 1217305..1218609 (-) 1305 WP_139848856.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FHQ13_RS06060 (FHQ13_006060) topA 1218658..1220736 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  FHQ13_RS06065 (FHQ13_006065) dprA 1220881..1221750 (-) 870 WP_000818043.1 DNA-processing protein DprA -
  FHQ13_RS06070 (FHQ13_006070) sucD 1221839..1222741 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  FHQ13_RS06075 (FHQ13_006075) sucC 1222761..1223921 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  FHQ13_RS06080 (FHQ13_006080) - 1224116..1224889 (-) 774 WP_001194265.1 ribonuclease HII -
  FHQ13_RS06085 (FHQ13_006085) ylqF 1224946..1225836 (-) 891 WP_000236704.1 ribosome biogenesis GTPase YlqF -
  FHQ13_RS06090 (FHQ13_006090) lepB 1225857..1226408 (-) 552 WP_000711853.1 signal peptidase I -
  FHQ13_RS06095 (FHQ13_006095) rplS 1226510..1226854 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  FHQ13_RS06100 (FHQ13_006100) trmD 1227001..1227735 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FHQ13_RS06105 (FHQ13_006105) rimM 1227735..1228250 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  FHQ13_RS06110 (FHQ13_006110) - 1228372..1228599 (-) 228 WP_000737401.1 KH domain-containing protein -
  FHQ13_RS06115 (FHQ13_006115) rpsP 1228614..1228886 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  FHQ13_RS06120 (FHQ13_006120) ffh 1228988..1230337 (-) 1350 WP_000863460.1 signal recognition particle protein -
  FHQ13_RS06125 (FHQ13_006125) - 1230350..1230682 (-) 333 WP_000891062.1 putative DNA-binding protein -
  FHQ13_RS06130 (FHQ13_006130) ftsY 1230816..1231805 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  FHQ13_RS06135 (FHQ13_006135) smc 1231821..1235390 (-) 3570 WP_000478974.1 chromosome segregation protein SMC -
  FHQ13_RS06140 (FHQ13_006140) rncS 1235537..1236274 (-) 738 WP_001146875.1 ribonuclease III -
  FHQ13_RS06145 (FHQ13_006145) acpP 1236333..1236566 (-) 234 WP_000786062.1 acyl carrier protein -
  FHQ13_RS06150 (FHQ13_006150) fabG 1236636..1237376 (-) 741 WP_139848855.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  FHQ13_RS06155 (FHQ13_006155) fabD 1237376..1238320 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  FHQ13_RS06160 (FHQ13_006160) plsX 1238335..1239327 (-) 993 WP_086389460.1 phosphate acyltransferase PlsX -
  FHQ13_RS06165 (FHQ13_006165) fapR 1239324..1239917 (-) 594 WP_000747348.1 transcription factor FapR -
  FHQ13_RS06170 (FHQ13_006170) recG 1240006..1242054 (-) 2049 WP_001000816.1 ATP-dependent DNA helicase RecG -
  FHQ13_RS06175 (FHQ13_006175) - 1242345..1244021 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  FHQ13_RS06180 (FHQ13_006180) - 1244044..1244406 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  FHQ13_RS06185 (FHQ13_006185) rpmB 1244783..1244971 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  FHQ13_RS06190 (FHQ13_006190) spoVM 1245045..1245125 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  FHQ13_RS06195 (FHQ13_006195) - 1245192..1245872 (-) 681 WP_000752663.1 thiamine diphosphokinase -
  FHQ13_RS06200 (FHQ13_006200) rpe 1245942..1246586 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  FHQ13_RS06205 (FHQ13_006205) rsgA 1246589..1247470 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  FHQ13_RS06210 (FHQ13_006210) pknB 1247717..1249690 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=618458 FHQ13_RS06035 WP_000421290.1 1213484..1214263(-) (codY) [Bacillus cereus strain A24]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=618458 FHQ13_RS06035 WP_000421290.1 1213484..1214263(-) (codY) [Bacillus cereus strain A24]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459