Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FHP23_RS19280 Genome accession   NZ_CP085498
Coordinates   3772627..3773406 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain A22     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3767627..3778406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP23_RS19255 (FHP23_019255) uppS 3768375..3769151 (-) 777 WP_000971296.1 isoprenyl transferase -
  FHP23_RS19260 (FHP23_019260) frr 3769237..3769794 (-) 558 WP_000531501.1 ribosome recycling factor -
  FHP23_RS19265 (FHP23_019265) pyrH 3769797..3770519 (-) 723 WP_000042668.1 UMP kinase -
  FHP23_RS19270 (FHP23_019270) tsf 3770586..3771473 (-) 888 WP_139847834.1 translation elongation factor Ts -
  FHP23_RS19275 (FHP23_019275) rpsB 3771577..3772278 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  FHP23_RS19280 (FHP23_019280) codY 3772627..3773406 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FHP23_RS19285 (FHP23_019285) hslU 3773484..3774875 (-) 1392 WP_000550087.1 ATP-dependent protease ATPase subunit HslU -
  FHP23_RS19290 (FHP23_019290) hslV 3774898..3775440 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  FHP23_RS19295 (FHP23_019295) xerC 3775483..3776382 (-) 900 WP_001101241.1 tyrosine recombinase XerC -
  FHP23_RS19300 (FHP23_019300) trmFO 3776448..3777752 (-) 1305 WP_000213002.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=618432 FHP23_RS19280 WP_000421290.1 3772627..3773406(-) (codY) [Bacillus cereus strain A22]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=618432 FHP23_RS19280 WP_000421290.1 3772627..3773406(-) (codY) [Bacillus cereus strain A22]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTAGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459