Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   IUJ58_RS15305 Genome accession   NZ_CP085485
Coordinates   3033142..3035499 (+) Length   785 a.a.
NCBI ID   WP_216143567.1    Uniprot ID   -
Organism   Priestia aryabhattai strain KNUC0118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3028142..3040499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ58_RS15285 (IUJ58_15255) cymR 3029499..3029915 (+) 417 WP_013059297.1 cysteine metabolism transcriptional regulator CymR -
  IUJ58_RS15290 (IUJ58_15260) - 3029939..3031081 (+) 1143 WP_274448548.1 cysteine desulfurase family protein -
  IUJ58_RS15295 (IUJ58_15265) mnmA 3031188..3032300 (+) 1113 WP_274447489.1 tRNA 2-thiouridine(34) synthase MnmA -
  IUJ58_RS15300 (IUJ58_15270) - 3032458..3033117 (+) 660 WP_013085089.1 tetratricopeptide repeat protein -
  IUJ58_RS15305 (IUJ58_15275) recD2 3033142..3035499 (+) 2358 WP_216143567.1 ATP-dependent RecD-like DNA helicase Machinery gene
  IUJ58_RS15310 (IUJ58_15280) - 3035641..3035832 (+) 192 WP_013059292.1 hypothetical protein -
  IUJ58_RS15315 (IUJ58_15285) - 3035858..3035992 (+) 135 WP_013059291.1 YrzQ family protein -
  IUJ58_RS15320 (IUJ58_15290) - 3036107..3037168 (+) 1062 WP_216143568.1 AI-2E family transporter -
  IUJ58_RS15325 (IUJ58_15295) alaS 3037557..3040190 (+) 2634 WP_216143569.1 alanine--tRNA ligase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88785.28 Da        Isoelectric Point: 5.1619

>NTDB_id=618364 IUJ58_RS15305 WP_216143567.1 3033142..3035499(+) (recD2) [Priestia aryabhattai strain KNUC0118]
MNEELVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDEVYTFYGDFKEHPKFGL
QFHVEQFKKALPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPKLSAEKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYITADQLYGKTAELLRKSRHENLSEMDLTREVDALKADKKLIIQDEKIYFPPLFYAEKGVVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSRQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGHAGIDKLNEVLQELFNPASEQRRELKHGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=618364 IUJ58_RS15305 WP_216143567.1 3033142..3035499(+) (recD2) [Priestia aryabhattai strain KNUC0118]
ATGAACGAAGAACTAGTGAACCCTTCACAGCCAGAGCGTCATTATATAAGCGGCACGTCAATTGTAACGGTCTTTCATAA
CGAAGAAAACTTATATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTTA
CAGGTTATTTTCCTAAGTTGAATGAAGATGAAGTATACACGTTTTACGGGGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTTCATGTTGAACAGTTTAAAAAAGCACTTCCACAATCAAGGCAAGGGGTTGTTCAGTACCTATCAAGCGATTTATT
TCACGGAATCGGTAAAAAAACCGCTGAAAACATTGTAGACGCCCTAGGAGAACGCGCTATTTTTCGTATTTTGCAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAAACTTTCAGCCGAAAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTAAAGTTGACGGACCTCGGGTTTGGACCGCAGCTTTCCATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTTCAGAATAATCCTTATCAGCTCGTAGAAGATATTCAAGGTATTGGCTTTAGCAGAGCTGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGCATTTTATACGTTATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACATCACGGCAGATCAGCTGTATGGAAAAACAGCAGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATTTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCATTAAAAGCAGACAAAAAGCTTATCATTCAAGACGAAA
AAATTTATTTTCCTCCCCTTTTCTATGCTGAAAAAGGGGTAGTTAAAGCTATTCAAAAAATTATGGCTCAAACGCAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTACTAGCTCTGGGTGAACTAGAAGAGCGATTAGACGTTCAATATGCACCGTC
TCAGCGCAAGGGTATACAAACCGCTTTAATGTCTCCAATGCTTCTTTTAACAGGTGGACCAGGTACTGGGAAAACAACGG
TTATTAAAGGAATAGTCGAACTTTATGCAGAACTTCACGGATGTTCGTTAAATCCAGGGGACTATAAAAAAGATGAAGCT
TTTCCTGTTTTACTTGTGGCACCTACAGGACGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCGGCAGTTACGAT
TCACAGATTATTAAAATGGAACGGACAAGAAGGATTTGACCATAATGAGGAGAATCCAATTGACGGAAAATTACTGATTG
TGGATGAAGTATCAATGGTAGATTTGTGGCTTGCTCATCAGCTGTTTAAGTCTCTTCCTGCTAATTTACAGGTTATTTTA
GTTGGAGACGAAGACCAGCTTCCTTCAGTAGGTCCGGGACAGGTGTTAAAAGATTTACTAAGTTCAGAAGTAGTTCCTAC
CGTCCGTCTGACAGATGTATACAGGCAAGCGGAAGGCTCGTCGATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGACTTATCGAGGCAGCAAGGAGATCGTTCCTTTATTCGCTGTCAAGGACAGCACATCACGAACGTCGTGCAA
CAAGTTTGCGGGAATGCGTTAAAAAAAGGCTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCATGC
AGGGATTGATAAACTGAACGAAGTCCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCACGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTCAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCAGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAACGAAGT
AACTTATACAAAACAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTCAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTTCGCCAGAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

AAA domain (AAA_30)

(344-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

63.939

99.618

0.637