Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   IUJ58_RS15215 Genome accession   NZ_CP085485
Coordinates   3013084..3015426 (+) Length   780 a.a.
NCBI ID   WP_274447482.1    Uniprot ID   -
Organism   Priestia aryabhattai strain KNUC0118     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3008084..3020426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IUJ58_RS15200 (IUJ58_15170) spoVB 3008600..3010150 (-) 1551 WP_216145111.1 stage V sporulation protein B -
  IUJ58_RS15205 (IUJ58_15175) - 3010275..3010568 (+) 294 WP_028411692.1 post-transcriptional regulator -
  IUJ58_RS15210 (IUJ58_15180) secDF 3010706..3012943 (+) 2238 WP_274447481.1 protein translocase subunit SecDF -
  IUJ58_RS15215 (IUJ58_15185) recJ 3013084..3015426 (+) 2343 WP_274447482.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  IUJ58_RS15220 (IUJ58_15190) - 3015442..3015954 (+) 513 WP_013059309.1 adenine phosphoribosyltransferase -
  IUJ58_RS15225 (IUJ58_15195) - 3016140..3018338 (+) 2199 WP_013059308.1 RelA/SpoT family protein -
  IUJ58_RS15230 (IUJ58_15200) dtd 3018354..3018815 (+) 462 WP_216143559.1 D-aminoacyl-tRNA deacylase -
  IUJ58_RS15235 (IUJ58_15205) - 3018806..3019690 (-) 885 WP_274447483.1 N-acetylmuramoyl-L-alanine amidase -
  IUJ58_RS15240 (IUJ58_15210) - 3019857..3020033 (+) 177 WP_274447484.1 RNA polymerase subunit sigma-70 -

Sequence

Protein


Download         Length: 780 a.a.        Molecular weight: 87870.44 Da        Isoelectric Point: 4.6998

>NTDB_id=618363 IUJ58_RS15215 WP_274447482.1 3013084..3015426(+) (recJ) [Priestia aryabhattai strain KNUC0118]
MLQSKKRWNVQECDEQLVNEFVENLNITPLVASLLLNRGMTTVEAAREFLHVDAQTFHDPFLLHDMDKAVARIQQAIDHN
EKIMIYGDYDADGVSSTSVMLSALQQLGADTDFYIPNRFTEGYGPNKAAFDKINAGGYQLVITVDTGISAVEETAYAREL
DFDLIITDHHEPGPVLPDAYAIIHPKLPGSTYPFKELAGVGVAFKLAHALLGELPEHLLELAVIGTIADLVPLIDENRLI
ARKGLDYLKLTKRTGVEALLSVCGVKREEITEDTIGFAMAPRINAVGRLQDADPAVHLLMTTNTEEAKGLAKEIDALNKE
RQQIVNDITEEAVEFVENMYPPDENSVLIVEGEGWNAGVVGIVASRLVEKFYRPTIVLSIDSENRIAKGSARSIEGFDLF
ANLSKCRDILPHFGGHPMAAGMTLNSDDVEELRARLNEQAGNVLTERDFIPITSVDTVCTTEEITLENIEQMSALAPFGM
HNPKPKVLIKDVHTTSMRKIGANKNHLKLVFEDSGVSVDAVGFGLGYILDEVSPIAKVSLVGELSINEWNNMRKPQLIVE
DISVDEWQMFDYRSAVDVKRFFEQVFTDQMKVVAFHDSTIDKYKSLLPLDHVVLIQNEEQAKACMFAGEQIVLLDLPPLQ
KWLEALFVQGIPFRIYAIFLTEEDHYFDTIPTRDHFKWFYGFLAKKGPFDLKRYKEDLAIHKGWSKETIDFMAKVFFELE
FVTINNGLISLVKNSAKRDLIESATYRQKQQQIEIEKNFIYTSYVQLKNQFQDIFKRSIE

Nucleotide


Download         Length: 2343 bp        

>NTDB_id=618363 IUJ58_RS15215 WP_274447482.1 3013084..3015426(+) (recJ) [Priestia aryabhattai strain KNUC0118]
ATGTTACAGTCAAAAAAACGTTGGAATGTTCAAGAATGTGATGAACAACTTGTTAATGAATTTGTAGAAAACCTCAATAT
TACACCTCTAGTAGCTTCGTTATTACTTAATAGAGGCATGACAACAGTAGAAGCGGCACGTGAGTTTTTACACGTTGATG
CACAAACGTTCCACGATCCGTTTTTATTGCACGATATGGACAAAGCGGTAGCTCGTATTCAGCAAGCAATTGATCATAAT
GAAAAAATTATGATCTATGGAGATTACGATGCGGACGGCGTCAGCAGTACATCTGTTATGTTATCTGCTTTACAGCAGCT
CGGCGCTGATACTGATTTTTATATTCCTAATCGCTTTACAGAAGGTTATGGGCCGAATAAGGCAGCATTTGATAAAATAA
ACGCAGGCGGCTATCAGCTGGTGATTACGGTAGACACAGGTATTTCGGCAGTCGAAGAAACGGCGTATGCACGTGAATTA
GATTTTGATTTAATTATTACGGATCACCACGAGCCGGGTCCGGTTTTACCGGATGCGTATGCAATTATTCATCCAAAGCT
GCCGGGAAGTACATATCCATTTAAAGAACTGGCAGGTGTAGGAGTGGCTTTTAAACTTGCTCATGCGCTGTTAGGGGAGC
TTCCGGAACATTTGTTAGAACTAGCAGTGATTGGGACGATTGCTGACTTAGTTCCTTTAATTGACGAAAACCGCTTAATT
GCTCGCAAAGGTCTTGACTATCTCAAGCTCACGAAGCGCACTGGAGTTGAAGCGCTGCTGAGCGTATGTGGAGTAAAGCG
CGAAGAAATTACTGAAGATACAATTGGATTTGCTATGGCTCCTCGCATTAATGCAGTAGGACGTCTTCAAGATGCTGATC
CAGCTGTTCACTTGCTTATGACAACAAATACTGAAGAAGCAAAAGGTTTAGCTAAAGAAATTGATGCGTTAAACAAGGAA
AGGCAGCAAATCGTAAACGATATTACGGAAGAAGCCGTTGAATTTGTTGAAAATATGTATCCTCCGGATGAAAACAGCGT
TCTTATTGTAGAGGGAGAAGGATGGAATGCAGGCGTTGTTGGAATTGTCGCTTCGAGGCTCGTAGAAAAGTTCTACAGAC
CAACAATTGTACTAAGTATTGACTCTGAAAACCGTATTGCCAAAGGTTCAGCAAGAAGTATCGAAGGCTTTGACTTATTC
GCGAACTTATCTAAATGCCGTGACATTTTGCCGCATTTTGGAGGGCATCCAATGGCAGCCGGCATGACGTTAAACAGCGA
TGATGTAGAAGAGCTGCGCGCACGTCTTAATGAACAAGCAGGCAACGTGTTAACCGAACGGGATTTTATTCCAATTACAT
CAGTTGATACAGTATGTACAACAGAGGAAATTACGCTGGAGAACATTGAACAAATGAGTGCGCTTGCTCCATTTGGTATG
CATAACCCGAAGCCAAAAGTTCTCATTAAAGATGTTCATACAACATCTATGCGGAAAATTGGTGCTAATAAAAATCATTT
AAAACTCGTATTTGAAGACAGCGGTGTATCGGTTGATGCAGTAGGATTTGGGTTAGGCTATATATTAGATGAAGTATCTC
CTATAGCTAAGGTATCATTAGTAGGTGAACTATCTATTAATGAGTGGAACAATATGCGTAAACCGCAGCTGATAGTAGAA
GATATCTCTGTAGACGAGTGGCAGATGTTTGATTATCGCAGTGCGGTTGATGTCAAACGTTTCTTTGAGCAGGTATTCAC
GGATCAAATGAAAGTTGTTGCTTTTCACGATTCAACAATTGATAAATACAAGTCGCTGCTGCCGCTGGATCATGTTGTTC
TTATTCAAAATGAAGAACAGGCAAAAGCATGTATGTTTGCAGGGGAACAGATCGTTTTATTAGATTTGCCTCCTTTACAG
AAGTGGCTTGAAGCTTTGTTTGTCCAAGGTATCCCTTTTAGAATATACGCTATTTTCTTAACGGAAGAAGACCATTATTT
TGATACAATCCCGACTCGCGATCACTTTAAATGGTTTTACGGCTTTTTAGCGAAAAAGGGTCCTTTTGATTTAAAACGCT
ACAAAGAAGATTTAGCGATTCATAAGGGTTGGTCGAAAGAAACGATTGATTTTATGGCAAAGGTGTTTTTTGAGTTAGAA
TTTGTTACAATAAACAATGGCTTAATTTCGTTAGTGAAAAATTCTGCGAAACGTGATTTAATAGAATCTGCGACTTATCG
CCAAAAGCAGCAGCAGATTGAAATAGAAAAAAACTTTATTTATACGTCATATGTACAGCTTAAAAATCAATTTCAAGATA
TTTTTAAGCGTTCGATTGAATGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(305-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.256

100

0.553