Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   NWO26_RS05425 Genome accession   NZ_CP102797
Coordinates   1071097..1071840 (-) Length   247 a.a.
NCBI ID   WP_011681551.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST057-1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066097..1076840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NWO26_RS05395 - 1066368..1067312 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  NWO26_RS05400 sepM 1067397..1068473 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  NWO26_RS05405 coaD 1068451..1068948 (-) 498 WP_014621910.1 pantetheine-phosphate adenylyltransferase -
  NWO26_RS05410 rsmD 1068982..1069521 (-) 540 WP_002951741.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NWO26_RS05415 trxB 1069672..1070592 (-) 921 WP_082309113.1 thioredoxin-disulfide reductase -
  NWO26_RS05420 - 1070658..1070882 (-) 225 WP_082309114.1 DUF4059 family protein -
  NWO26_RS05425 amiE 1071097..1071840 (-) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein Regulator
  NWO26_RS05430 - 1071840..1072586 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  NWO26_RS05435 - 1072982..1073812 (-) 831 WP_014727671.1 transporter substrate-binding domain-containing protein -
  NWO26_RS05440 - 1074272..1074505 (-) 234 WP_002947030.1 hypothetical protein -
  NWO26_RS05445 dinB 1074803..1075906 (-) 1104 WP_011681554.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7813

>NTDB_id=618291 NWO26_RS05425 WP_011681551.1 1071097..1071840(-) (amiE) [Streptococcus thermophilus strain ST057-1]
MISIKNVTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=618291 NWO26_RS05425 WP_011681551.1 1071097..1071840(-) (amiE) [Streptococcus thermophilus strain ST057-1]
ATGATTAGTATCAAAAATGTGACCAAGGAATTTTCAGGACAAAAGGTTCTAGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCTATGGTTTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCGAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364