Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIS78_RS23380 Genome accession   NZ_CP085442
Coordinates   4493781..4496138 (-) Length   785 a.a.
NCBI ID   WP_252284408.1    Uniprot ID   -
Organism   Priestia megaterium strain KF18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4488781..4501138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS78_RS23360 (LIS78_23380) alaS 4489090..4491723 (-) 2634 WP_252284407.1 alanine--tRNA ligase -
  LIS78_RS23365 (LIS78_23385) - 4492112..4493173 (-) 1062 WP_195781819.1 AI-2E family transporter -
  LIS78_RS23370 (LIS78_23390) - 4493288..4493422 (-) 135 WP_013059291.1 YrzQ family protein -
  LIS78_RS23375 (LIS78_23395) - 4493448..4493639 (-) 192 WP_013059292.1 hypothetical protein -
  LIS78_RS23380 (LIS78_23400) recD2 4493781..4496138 (-) 2358 WP_252284408.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIS78_RS23385 (LIS78_23405) - 4496163..4496822 (-) 660 WP_195781817.1 tetratricopeptide repeat protein -
  LIS78_RS23390 (LIS78_23410) mnmA 4496980..4498092 (-) 1113 WP_252284409.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIS78_RS23395 (LIS78_23415) - 4498199..4499341 (-) 1143 WP_252284410.1 cysteine desulfurase family protein -
  LIS78_RS23400 (LIS78_23420) - 4499365..4499781 (-) 417 WP_013059297.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88840.27 Da        Isoelectric Point: 4.9873

>NTDB_id=618154 LIS78_RS23380 WP_252284408.1 4493781..4496138(-) (recD2) [Priestia megaterium strain KF18]
MNEELVNPSQPERHYISGTSIVTVFHNEENLYNVTRIRIKKTNLEIEDKETVVTGYFPKLNEDETYTFYGDFKEHPKFGL
QFHVEQFKKELPQSRQGVVQYLSSDLFHGIGKKTAENIVDALGERAIFRILQNESVLKEVPRLSADKAEALVTQLREHQG
LEEVMVKLTDLGFGPQLSMKIFQAYKQEALEIVQNNPYQLVEDIQGIGFSRADELGKRLGMATNHPDRLRAGILYVIEQE
CNQMGHVYVTADQLYGKTAELLRKSRHENLSEMDLTREVDALKEDKKLIIQDEKIYFPPLFYAEKGLVKAIQKIMAQTQY
EEQFPESEFLLALGELEERLDVQYAPSQRKGIQTALMSPMLLLTGGPGTGKTTVIKGIVELYAELHGCSLNPGDYKKDEA
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHNEENPIDGKLLIVDEVSMVDLWLAHQLFKSLPANLQVIL
VGDEDQLPSVGPGQVLKDLLSSEVVPTVRLTDVYRQAEGSSIIDLAHEIKKGKLPEDLSKQQGDRSFIRCQGQHITNVVQ
QVCGNALKKGYTAKDIQVLAPMYKGPAGIDKLNEVLQELFNPASEQRRELKQGDITYRVGDKVLQLVNQPDSNVFNGDMG
EIVSVFFAKENTEKQDMLVISYEGNEVTYTKQDFNQITHAYCCSIHKSQGSEFPIVVLPIVKSYYRMLRRNLLYTAVTRS
KQFLILCGEDEAFQLGVSRNEDSVRQTNLQPLLRESLDNDIEDPEIPFMKDANIGMENVTPYDFM

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=618154 LIS78_RS23380 WP_252284408.1 4493781..4496138(-) (recD2) [Priestia megaterium strain KF18]
ATGAACGAAGAACTAGTGAACCCTTCACAGCCAGAACGTCATTATATAAGCGGCACGTCGATTGTAACCGTCTTTCATAA
CGAAGAAAACTTGTATAACGTTACGCGGATACGGATCAAAAAAACAAATTTAGAGATTGAAGATAAAGAAACGGTCGTCA
CAGGTTATTTTCCTAAGCTGAATGAAGATGAAACATACACGTTTTACGGAGACTTCAAAGAGCATCCAAAGTTTGGTCTG
CAGTTCCATGTTGAACAGTTTAAAAAAGAACTTCCACAATCAAGGCAAGGGGTTGTTCAGTACCTATCTAGTGATTTATT
TCACGGAATTGGTAAAAAAACCGCTGAAAATATTGTAGACGCCTTAGGAGAACGCGCTATCTTTCGTATTTTACAAAATG
AGTCTGTGCTAAAAGAGGTTCCGAGGCTTTCAGCCGACAAGGCAGAAGCTTTAGTCACGCAGCTTCGTGAACATCAAGGG
TTAGAAGAAGTAATGGTCAAGCTGACGGACCTCGGGTTTGGACCACAGCTTTCGATGAAGATTTTCCAAGCGTACAAACA
AGAAGCGCTTGAAATTGTGCAAAATAACCCATATCAGCTTGTAGAAGATATTCAAGGTATTGGTTTTAGCCGGGCCGATG
AACTTGGAAAGAGGCTTGGTATGGCAACCAATCATCCTGATCGTTTGCGTGCAGGTATTTTATATGTCATTGAGCAAGAA
TGCAATCAAATGGGACATGTATACGTCACGGCAGATCAGCTGTACGGAAAAACAGCGGAGCTTCTTCGAAAAAGCAGGCA
TGAGAATCTGTCTGAAATGGATCTTACAAGAGAAGTGGACGCGTTAAAAGAAGATAAAAAGCTTATTATTCAAGACGAAA
AAATTTATTTTCCGCCCCTTTTCTATGCTGAAAAAGGGCTGGTTAAAGCTATTCAAAAAATTATGGCTCAAACACAGTAC
GAAGAGCAGTTTCCAGAATCAGAATTTTTATTAGCTCTAGGTGAGCTGGAAGAGCGATTAGACGTACAGTATGCACCGTC
TCAGCGCAAAGGAATACAAACCGCTTTAATGTCTCCAATGCTCCTTTTAACAGGTGGACCAGGCACAGGGAAAACAACGG
TTATTAAAGGAATAGTTGAACTCTATGCAGAGCTTCACGGATGTTCGTTAAATCCAGGTGATTACAAAAAAGATGAAGCT
TTTCCTGTTTTGCTTGTGGCACCTACTGGCCGAGCTGCTAAACGAATGAGCGAAGCGACGGGACTTCCTGCAGTTACCAT
TCACAGATTATTAAAATGGAACGGGCAAGAAGGATTTGATCATAATGAGGAGAATCCGATCGACGGCAAATTACTGATTG
TGGATGAAGTCTCGATGGTAGATTTATGGCTTGCTCATCAGCTGTTTAAATCCCTTCCTGCTAATTTACAGGTTATTCTC
GTTGGAGACGAAGATCAGCTTCCTTCAGTAGGTCCGGGACAGGTGCTAAAAGATTTGCTGAGTTCAGAAGTAGTTCCTAC
CGTCCGCCTGACAGATGTATACAGACAAGCGGAAGGATCGTCAATTATTGATTTGGCTCATGAAATAAAAAAAGGAAAGC
TTCCGGAAGATTTATCTAAACAGCAAGGAGATCGTTCCTTCATTCGTTGTCAAGGACAACACATCACAAACGTCGTTCAG
CAAGTGTGCGGGAATGCGTTAAAGAAAGGGTATACGGCTAAAGATATTCAAGTTCTAGCTCCTATGTATAAAGGTCCTGC
AGGGATTGATAAACTGAATGAAGTTCTTCAGGAATTATTTAACCCGGCTTCTGAGCAAAGAAGAGAGCTTAAGCAGGGAG
ATATTACGTACCGAGTCGGAGATAAAGTGCTGCAGCTTGTAAATCAGCCGGATAGCAACGTATTTAACGGAGATATGGGA
GAAATCGTCTCCGTTTTCTTTGCCAAAGAAAATACGGAAAAACAGGATATGCTGGTTATTTCATATGAAGGAAATGAAGT
AACTTACACAAAGCAAGACTTTAATCAAATAACTCATGCATACTGCTGTTCCATTCATAAATCACAGGGAAGTGAATTTC
CCATTGTTGTGCTTCCAATTGTCAAAAGCTATTACCGGATGCTGCGACGCAATTTACTTTATACCGCCGTTACGCGAAGC
AAACAGTTTTTAATTTTATGCGGCGAAGACGAAGCGTTTCAGCTTGGAGTCAGCCGAAATGAAGACAGCGTTCGCCAAAC
GAATTTACAGCCCTTGCTTCGAGAAAGCTTGGATAACGACATAGAAGATCCCGAAATTCCATTTATGAAAGATGCAAATA
TTGGGATGGAAAACGTTACGCCGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

AAA domain (AAA_30)

(344-551)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

64.194

99.618

0.639