Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIS80_RS21395 Genome accession   NZ_CP085413
Coordinates   4139996..4142332 (-) Length   778 a.a.
NCBI ID   WP_000528072.1    Uniprot ID   A0A5M9GYL3
Organism   Bacillus paranthracis strain KF11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4134996..4147332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS21370 (LIS80_21400) - 4137657..4138001 (+) 345 Protein_4174 PH domain-containing protein -
  LIS80_RS21375 (LIS80_21405) - 4138041..4139108 (-) 1068 WP_000793110.1 AI-2E family transporter -
  LIS80_RS21380 (LIS80_21410) - 4139285..4139497 (+) 213 WP_000242543.1 hypothetical protein -
  LIS80_RS21385 (LIS80_21415) - 4139533..4139661 (-) 129 WP_001053552.1 YrzQ family protein -
  LIS80_RS21390 (LIS80_21420) - 4139680..4139868 (-) 189 WP_000469281.1 hypothetical protein -
  LIS80_RS21395 (LIS80_21425) recD2 4139996..4142332 (-) 2337 WP_000528072.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIS80_RS21400 (LIS80_21430) - 4142428..4143087 (-) 660 WP_000066391.1 tetratricopeptide repeat protein -
  LIS80_RS21405 (LIS80_21435) mnmA 4143197..4144312 (-) 1116 WP_001038006.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIS80_RS21410 (LIS80_21440) - 4144329..4145474 (-) 1146 WP_000439906.1 cysteine desulfurase family protein -
  LIS80_RS21415 (LIS80_21445) - 4145510..4145926 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87403.83 Da        Isoelectric Point: 5.2015

>NTDB_id=617931 LIS80_RS21395 WP_000528072.1 4139996..4142332(-) (recD2) [Bacillus paranthracis strain KF11]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIVGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=617931 LIS80_RS21395 WP_000528072.1 4139996..4142332(-) (recD2) [Bacillus paranthracis strain KF11]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACGTTGACAGGTCATTTTAAAGACCATCCAAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTGGGGGAACATGCTATTTCTAAAATTATGGATG
ATCCTGAGGCTTTAAATGGTGTTGTCAACAAGCAAAAAGCACAAGAAATTTATGAGACAATTGTTGAACATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTAATTCGTAATAACCCGTACCAACTTATTGAAGAAGTGGACGGAATTGGTTTTGGAAGAGCGGATGATA
TCGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGACCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCAACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAGGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGAAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGGAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAGTCATTGCCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAGATTTATCGTCAAGCGGAAGGTTCATCAGTAATTCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAACCAAAAAGATCGTTCATTTATCGGTTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAGAATGCGAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTAGCCCCGATGTATCGTGGACCGGCGGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTCTTGCAACTTGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGTCGATTGCAAGAATCACAAGGAGAAGTACAGATGGTAACGGTTAACGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTTATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M9GYL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58