Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIT28_RS22380 Genome accession   NZ_CP085409
Coordinates   4345962..4348298 (-) Length   778 a.a.
NCBI ID   WP_242256439.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4340962..4353298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS22355 (LIT28_22370) - 4343624..4343968 (+) 345 WP_242256441.1 PH domain-containing protein -
  LIT28_RS22360 (LIT28_22375) - 4344007..4345074 (-) 1068 WP_063222865.1 AI-2E family transporter -
  LIT28_RS22365 (LIT28_22380) - 4345251..4345463 (+) 213 WP_060632362.1 hypothetical protein -
  LIT28_RS22370 (LIT28_22385) - 4345499..4345627 (-) 129 WP_001053553.1 YrzQ family protein -
  LIT28_RS22375 (LIT28_22390) - 4345646..4345834 (-) 189 WP_000469281.1 hypothetical protein -
  LIT28_RS22380 (LIT28_22395) recD2 4345962..4348298 (-) 2337 WP_242256439.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIT28_RS22385 (LIT28_22400) - 4348394..4349053 (-) 660 WP_242256438.1 tetratricopeptide repeat protein -
  LIT28_RS22390 (LIT28_22405) mnmA 4349164..4350279 (-) 1116 WP_016135363.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIT28_RS22395 (LIT28_22410) - 4350296..4351441 (-) 1146 WP_063222862.1 cysteine desulfurase family protein -
  LIT28_RS22400 (LIT28_22415) - 4351477..4351893 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87261.77 Da        Isoelectric Point: 5.1441

>NTDB_id=617881 LIT28_RS22380 WP_242256439.1 4345962..4348298(-) (recD2) [Bacillus thuringiensis strain KF1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEMFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALSGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNSQEGRVTEEDIIGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLTVQYAPLQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDVMRQTTLASRLQESQGEVQIVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=617881 LIT28_RS22380 WP_242256439.1 4345962..4348298(-) (recD2) [Bacillus thuringiensis strain KF1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACAAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAATGGTCATTTTCCCCGTATGCATGAAGATGAAATGTTTACATTGACAGGTCATTTTAAGGATCATCCAAAGTATGGG
AAACAATATTTAGTTGAAACATTTAAAAAAGAATTACCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGAATCGGAAAGCGTACAGCTGAAAAAATTGTGGACCATCTTGGGGAACATGCCATTTCTAAAATTATGGATG
ATCCTGAGGCGTTAAGTGGTGTTGTCAACAAACAAAAAGCGCAGGAAATATATGAGACAATTGTTGAGCATCAAGGGCTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAACAATATAAAGAGAT
GACGTTAGAAGTGATTCGTAATAATCCATATCAACTTATTGAAGAAGTGGACGGCATTGGCTTTGGACGAGCAGATGATA
TAGGACGTGCGTTAGGGATATCGGGTAATCACGATGATCGTGTACGTGCAGGATGTTTTTATACGCTAGAGAATGTTTCA
CTGCAACTCGGTCACGTTTATATGGGAAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAGCCAAGAAGGAAG
AGTGACAGAGGAAGACATTATAGGCTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTCATAATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGGAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCTGAAGCTGAAGTGTTAAAGACGTTAGGTGAAATTGAAGAACAGCTGACTGTTCAGTATGCACCGCTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTATTAACGGCTCCAACGGGAAGAGCGGCGAAGCGTATGAGTGAATCAACAGGTCTTCCAGCTTGTACAATTCATCGTTT
ACTTGGCTGGACACCAGAAGGGTCTTTCCAACGTAATGAAACGGACCCGGTACAAGGGAAATTGCTCATAATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCGAATCAGCTGTTTAAATCACTGCCGACAAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCAGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTAAAGCT
TACTGAGATTTATCGTCAAGCGGAAGGTTCATCTGTTATCCAACTTGCCCATGCGATAAAAAATGGAACGCTCCCGCCAG
ATTTAGCGCAAAACCAAAAAGATCGTTCGTTTATTGGCTGTACAGGAGCACAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTGTTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ATCGAAGAGGCGATAAAGTACTACAGCTTGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAGCCGGATTTAAATCAAATTACACATGCATATTGTTGTTCGATTCATAAATCGCAAGGTAGTGAATTTCCGATTGTGA
TTATGCCGATAGTAAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCCGCTTTCCAGTCTGGTGTAAATCGCCTTGATGATGTAATGCGTCAAACGACTTTAGC
TAGTCGTTTGCAAGAATCACAAGGAGAAGTACAGATAGTAACAGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58