Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LIT24_RS25305 Genome accession   NZ_CP085406
Coordinates   4891575..4892156 (+) Length   193 a.a.
NCBI ID   WP_001049162.1    Uniprot ID   A0A9W5QPC2
Organism   Bacillus bombysepticus strain F12     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 4886575..4897156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT24_RS25270 (LIT24_25280) - 4887571..4887777 (+) 207 WP_000216166.1 DUF1657 domain-containing protein -
  LIT24_RS25275 (LIT24_25285) - 4887871..4888356 (+) 486 WP_001228546.1 YhcN/YlaJ family sporulation lipoprotein -
  LIT24_RS25280 (LIT24_25290) spoVAC 4888386..4888862 (+) 477 WP_000095399.1 stage V sporulation protein AC -
  LIT24_RS25285 (LIT24_25295) spoVAD 4888863..4889879 (+) 1017 WP_000938972.1 stage V sporulation protein AD -
  LIT24_RS25290 (LIT24_25300) spoVAE 4889876..4890226 (+) 351 WP_000575919.1 stage V sporulation protein AE -
  LIT24_RS25295 (LIT24_25305) - 4890238..4890444 (+) 207 WP_000215909.1 DUF1657 domain-containing protein -
  LIT24_RS25300 (LIT24_25310) - 4890465..4891334 (+) 870 WP_000018924.1 DUF421 domain-containing protein -
  LIT24_RS25305 (LIT24_25315) clpP 4891575..4892156 (+) 582 WP_001049162.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  LIT24_RS25310 (LIT24_25320) - 4892666..4892914 (-) 249 WP_000250307.1 HPr family phosphocarrier protein -
  LIT24_RS25315 (LIT24_25325) whiA 4892938..4893888 (-) 951 WP_000006560.1 DNA-binding protein WhiA -
  LIT24_RS25320 (LIT24_25330) - 4893977..4894930 (-) 954 WP_000712186.1 YvcK family protein -
  LIT24_RS25325 (LIT24_25335) rapZ 4894934..4895815 (-) 882 WP_000138459.1 RNase adapter RapZ -
  LIT24_RS25330 (LIT24_25340) - 4895836..4896294 (-) 459 WP_001190080.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21419.67 Da        Isoelectric Point: 5.0423

>NTDB_id=617841 LIT24_RS25305 WP_001049162.1 4891575..4892156(+) (clpP) [Bacillus bombysepticus strain F12]
MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGMAIYDT
MQFIKPQVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILFLREKLNQILADRTGQ
PLEVLQRDTDRDNFMTAEKALEYGLIDKIFTNR

Nucleotide


Download         Length: 582 bp        

>NTDB_id=617841 LIT24_RS25305 WP_001049162.1 4891575..4892156(+) (clpP) [Bacillus bombysepticus strain F12]
ATGAATTTAATTCCTACAGTAATTGAACAAACAAATCGTGGAGAACGCGCTTACGATATTTACTCTCGACTATTAAAAGA
CCGCATCATTATGCTTGGTAGTGCAATTGATGACAACGTAGCTAACTCAATCGTTTCCCAGCTTTTATTCTTGGAATCTC
AAGATCCAGAAAAAGATATTCACATCTACATCAACAGCCCTGGTGGTTCTATCACAGCAGGTATGGCAATCTATGATACA
ATGCAGTTTATTAAGCCACAAGTATCAACAATCTGTATCGGTATGGCAGCATCTATGGGTGCATTCTTACTTGCAGCAGG
TGAAAAAGGAAAACGTTATGCACTTCCAAACAGTGAAGTAATGATTCACCAACCACTTGGAGGAGCACAAGGTCAAGCGA
CTGAAATCGAAATCGCTGCAAAACGTATCCTATTCTTACGTGAAAAACTAAACCAAATTCTTGCTGACCGCACTGGTCAA
CCCCTTGAAGTACTACAACGCGACACAGACCGCGACAACTTCATGACAGCAGAAAAAGCTTTAGAATACGGTTTAATCGA
TAAGATCTTTACAAATCGTTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

90.104

99.482

0.896
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.021

97.409

0.653
  clpP Streptococcus thermophilus LMG 18311

60.417

99.482

0.601
  clpP Streptococcus thermophilus LMD-9

60.417

99.482

0.601
  clpP Lactococcus lactis subsp. cremoris KW2

58.854

99.482

0.585
  clpP Streptococcus pneumoniae D39

57.292

99.482

0.57
  clpP Streptococcus pneumoniae Rx1

57.292

99.482

0.57
  clpP Streptococcus pneumoniae R6

57.292

99.482

0.57
  clpP Streptococcus pneumoniae TIGR4

57.292

99.482

0.57
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

56.771

99.482

0.565
  clpP Streptococcus pyogenes JRS4

55.729

99.482

0.554
  clpP Streptococcus pyogenes MGAS315

55.729

99.482

0.554
  clpP Streptococcus mutans UA159

55.44

100

0.554