Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LIT29_RS15355 Genome accession   NZ_CP085398
Coordinates   2935594..2937954 (-) Length   786 a.a.
NCBI ID   WP_252264914.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain F17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2930594..2942954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS15340 (LIT29_15365) dtd 2932137..2932574 (-) 438 WP_048006205.1 D-aminoacyl-tRNA deacylase -
  LIT29_RS15345 (LIT29_15370) - 2932589..2934781 (-) 2193 WP_048006206.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LIT29_RS15350 (LIT29_15375) - 2935091..2935603 (-) 513 WP_048006207.1 adenine phosphoribosyltransferase -
  LIT29_RS15355 (LIT29_15380) recJ 2935594..2937954 (-) 2361 WP_252264914.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LIT29_RS15360 (LIT29_15385) - 2938064..2938408 (-) 345 WP_048006209.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  LIT29_RS15365 (LIT29_15390) secDF 2938595..2940856 (-) 2262 WP_252264915.1 protein translocase subunit SecDF -
  LIT29_RS15370 (LIT29_15395) - 2941029..2941349 (-) 321 WP_048006211.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88538.10 Da        Isoelectric Point: 4.8439

>NTDB_id=617681 LIT29_RS15355 WP_252264914.1 2935594..2937954(-) (recJ) [Rossellomorea marisflavi strain F17]
MLNAKTRWKMKDSDQQKIAELAEELNVPPLVAKLLINRDLADADDARNFLFDTGGSFHDPFLFDDMQKAKERIMLAIEQE
ERILVYGDYDADGVSSTSVLMTVLTDLGAQVEFYIPNRFTEGYGPNEEAFRWAADEGFSVIITVDTGISAVEEAKLAKDL
GIDLILTDHHEPGPELPPVYAMIHPKVEGCSYPFKELAGVGVALKLAHALYGEFPDHLLDLAAIGTIADLVPLHGENRLI
AKKGIAKLRVTDRLGIKALCRVANAQQNEMNEETVGFMIAPRINAVGRLGDADPAVDLMLSRDPEEAKALAEEIDGLNKE
RQSIVAKMTEEAVEMVEKEFPPSENGVLVIGKEGWNPGVVGIVASRLVDRFYRPTIVLSFDPDSNRAKGSARSIAGFDLF
KNLSMNREILPHFGGHPMAAGMTLALSDVDELRARLNEQAKDVLNEEDFVPVTELDAEVAVDEITVESIEKMHLLAPFGM
NNPKPKWVIRDVSIDHYKKIGSAQNHLKLVLAENGVQVDGVGFGLGELADHMTPYVKASVIGELSINEWNNRKKPQIFLQ
DIQISSWQLFDMRGIKQVTKWAPLIPDSDRVIVCFHPKTADTSLFKGEVRYIQSESDLEGIVVDGCNLVFLDLPGDRRLM
EQLLELGRPHRIYAHFHQHEDHFFSTMPTRDHFKWYYAFLHKRGSFDLKKHGNDLAKYKGWSMETIDFMSKVFFELKFVT
IEDGLISLHPVKVKKDLSESPAYMRKQHQYELENELLYSSYQELKTWFSERMKESAIVEEEVEAWT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=617681 LIT29_RS15355 WP_252264914.1 2935594..2937954(-) (recJ) [Rossellomorea marisflavi strain F17]
ATGTTGAATGCAAAAACACGCTGGAAAATGAAAGATTCTGACCAGCAAAAGATAGCAGAATTGGCAGAAGAGTTAAATGT
TCCCCCGCTTGTTGCGAAATTATTGATAAATCGGGATCTGGCTGATGCTGATGATGCCCGGAACTTTTTATTTGATACAG
GCGGATCGTTTCATGATCCATTTCTTTTTGATGATATGCAAAAAGCGAAAGAGCGCATCATGCTGGCAATCGAGCAGGAG
GAGCGCATCCTTGTGTACGGTGACTATGATGCCGACGGGGTAAGTTCTACATCCGTCCTGATGACGGTACTCACAGACCT
CGGAGCACAGGTGGAATTTTATATCCCCAACCGGTTCACAGAAGGATACGGACCGAATGAAGAAGCCTTCAGATGGGCTG
CTGATGAGGGATTCTCCGTTATCATCACGGTGGATACCGGTATTTCTGCAGTGGAGGAGGCCAAGCTTGCAAAAGATCTT
GGCATTGACTTGATCTTGACGGACCACCATGAACCGGGTCCGGAATTGCCGCCAGTCTATGCGATGATCCATCCGAAAGT
GGAAGGATGCTCGTATCCATTCAAGGAACTCGCAGGAGTCGGGGTTGCTTTGAAGCTAGCCCACGCACTTTACGGGGAGT
TTCCCGACCATCTGCTGGATTTGGCCGCGATCGGTACCATTGCCGACCTTGTTCCCCTCCACGGGGAAAACCGGCTGATC
GCCAAGAAGGGGATTGCCAAGCTGAGGGTGACGGACCGGCTTGGGATCAAAGCCCTTTGCCGGGTGGCGAATGCTCAGCA
AAATGAAATGAATGAAGAGACCGTCGGATTCATGATTGCACCGCGTATCAATGCCGTCGGCAGGCTTGGCGATGCCGATC
CGGCAGTGGATCTCATGCTCTCCCGCGATCCGGAAGAAGCGAAGGCACTCGCAGAAGAGATTGATGGGTTGAACAAAGAG
CGCCAGTCCATCGTAGCGAAAATGACGGAGGAAGCCGTCGAGATGGTCGAGAAGGAATTCCCTCCTTCTGAAAACGGAGT
TCTTGTTATCGGTAAGGAAGGATGGAACCCCGGGGTAGTGGGGATTGTTGCCTCCCGTCTCGTTGACAGGTTTTACAGGC
CGACCATTGTCTTGAGTTTCGATCCTGATTCAAATAGAGCAAAGGGTTCGGCAAGGAGCATTGCCGGGTTCGATCTGTTC
AAGAACCTGTCCATGAATCGAGAAATTCTTCCCCATTTCGGGGGGCATCCAATGGCTGCGGGAATGACCCTAGCCCTTTC
GGATGTCGATGAGCTTCGTGCAAGATTGAATGAACAGGCAAAAGATGTACTGAATGAAGAAGATTTCGTCCCCGTTACAG
AGCTTGATGCCGAAGTCGCCGTGGACGAGATCACCGTTGAATCCATCGAGAAGATGCACCTCCTTGCGCCATTCGGGATG
AATAATCCGAAGCCTAAGTGGGTCATCCGCGATGTATCCATCGATCATTATAAAAAAATTGGTTCAGCACAGAATCACCT
CAAGCTTGTCCTGGCCGAAAACGGCGTACAAGTGGATGGGGTGGGGTTCGGTCTCGGTGAACTTGCCGATCATATGACAC
CCTATGTGAAGGCTTCCGTCATCGGAGAGCTGTCGATCAATGAATGGAATAATCGCAAGAAGCCTCAGATCTTCCTGCAG
GATATCCAGATTTCTTCCTGGCAGCTTTTCGATATGAGGGGGATCAAACAGGTGACTAAATGGGCACCTCTCATACCTGA
CAGTGACAGGGTGATCGTATGCTTCCATCCGAAGACGGCGGACACATCGCTGTTCAAAGGGGAAGTCCGGTATATTCAGA
GTGAATCGGATCTTGAAGGGATCGTGGTGGATGGATGCAATCTCGTATTCCTCGATCTTCCCGGGGACCGTCGCCTGATG
GAGCAGCTTCTGGAGCTCGGCAGGCCGCATCGCATCTATGCCCATTTCCATCAGCATGAGGATCATTTCTTCAGTACGAT
GCCCACCCGTGATCATTTCAAATGGTATTATGCCTTCCTTCATAAAAGAGGTTCATTTGATTTGAAGAAACACGGGAATG
ACCTTGCCAAGTACAAGGGATGGTCGATGGAAACAATCGATTTCATGTCAAAGGTGTTTTTTGAATTGAAGTTTGTTACA
ATAGAAGATGGTTTGATTTCTCTTCATCCTGTCAAAGTGAAGAAAGACCTGTCCGAATCTCCTGCCTACATGAGGAAGCA
GCATCAGTACGAGCTTGAAAATGAGCTCCTGTATTCGTCATATCAGGAACTGAAGACATGGTTCAGCGAAAGGATGAAAG
AGTCCGCTATAGTTGAGGAGGAAGTAGAAGCATGGACTTGA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(305-439)

RecJ OB domain (RecJ_OB)

(456-561)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-768)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.841

99.109

0.553