Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIT29_RS15245 Genome accession   NZ_CP085398
Coordinates   2910724..2913093 (-) Length   789 a.a.
NCBI ID   WP_063191732.1    Uniprot ID   A0A165JC19
Organism   Rossellomorea marisflavi strain F17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2905724..2918093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS15220 (LIT29_15245) - 2905785..2906051 (-) 267 WP_048006427.1 IreB family regulatory phosphoprotein -
  LIT29_RS15225 (LIT29_15250) alaS 2906135..2908759 (-) 2625 WP_252266549.1 alanine--tRNA ligase -
  LIT29_RS15230 (LIT29_15255) - 2909068..2910153 (-) 1086 WP_252264909.1 AI-2E family transporter -
  LIT29_RS15235 (LIT29_15260) - 2910244..2910375 (-) 132 WP_082139339.1 YrzQ family protein -
  LIT29_RS15240 (LIT29_15265) - 2910391..2910576 (-) 186 WP_048006190.1 hypothetical protein -
  LIT29_RS15245 (LIT29_15270) recD2 2910724..2913093 (-) 2370 WP_063191732.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIT29_RS15250 (LIT29_15275) - 2913111..2913782 (-) 672 WP_048006192.1 tetratricopeptide repeat protein -
  LIT29_RS15255 (LIT29_15280) mnmA 2914032..2915147 (-) 1116 WP_048012625.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIT29_RS15260 (LIT29_15285) - 2915177..2916319 (-) 1143 WP_252264910.1 cysteine desulfurase family protein -
  LIT29_RS15265 (LIT29_15290) - 2916331..2916750 (-) 420 WP_048006195.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89139.45 Da        Isoelectric Point: 4.7689

>NTDB_id=617680 LIT29_RS15245 WP_063191732.1 2910724..2913093(-) (recD2) [Rossellomorea marisflavi strain F17]
MSQQDSLQLFGDEELYVKGRHLVTIFHNEDNMYSVVRIRVEETNDEDYSDKEAVVTGHFPKLHEDETYSFFGRFQDHPKF
GTQFHADHFKKEIPQSKQGIVHYLSSDLFSGIGTKTAEKIVEHVGENAITKILENPSVLDEVPKLPKEKAKTIFDTLSEH
QGLERVMIMLNDFGFGPQISMKIYQAYKEQALEIIHNNPYKLVEDIEGIGFNRADELGSKIGITGSHPDRIKAGCLYTLE
QMCVKQGHVYLEAEELIVSVKELLEKSQSERIEFEEISAQVVALEEEGKVAGEGTKIYTPSLYFSEKGIVSNIERILAQT
DYEDQFPQSEFLLSLGSLEDRLGVQYAPSQREAIQTALMSPMLLLTGGPGTGKTTVINGIVELYADLHGCSLDPKEYKDE
PFPVLLAAPTGRAAKRMTESTGLPAMTIHRLLGWNGKEGFQTDEERTIEGKLLIVDEVSMVDTWLAHQLLKALPENIQVI
FVGDEDQLPSVGPGQVLKDLLESGRVPTVRLTDIYRQEEGSSIIDLAHQMKDGRLPHDLVKQQKDRSFFPCRTNQIAEVV
QKVVENAKKKGFTPKDIQVLAPMYRGPAGIDRLNVLLQEIFNKNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDI
GEVVSIFYAKENTEKQDMVIVSYEGTEVTYTRQDLGQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITR
SKQFLILCGEEDAFRMGVEREEDIIRKTTLKERLQSMEDIVPADEAPFDLMNVDPMIGMEGITPYDFMT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=617680 LIT29_RS15245 WP_063191732.1 2910724..2913093(-) (recD2) [Rossellomorea marisflavi strain F17]
TTGAGCCAGCAAGACTCTTTACAATTATTTGGAGACGAAGAACTGTATGTCAAAGGACGCCATCTTGTCACGATTTTCCA
CAATGAAGATAATATGTACAGCGTCGTGCGCATCAGGGTGGAAGAGACCAATGATGAGGACTACAGTGATAAAGAAGCCG
TGGTCACGGGCCATTTCCCGAAGCTTCATGAAGATGAGACCTATTCGTTTTTCGGTCGATTCCAGGATCACCCGAAGTTC
GGCACGCAGTTTCATGCCGATCACTTCAAGAAGGAGATCCCCCAATCGAAGCAGGGGATCGTCCACTATCTATCGAGTGA
TCTGTTTAGTGGAATCGGGACGAAGACGGCTGAAAAGATTGTAGAACACGTCGGGGAGAATGCCATCACCAAAATCCTCG
AGAATCCATCGGTCCTCGATGAGGTGCCGAAGCTTCCAAAGGAAAAGGCCAAGACCATCTTTGATACATTATCCGAGCAT
CAGGGTCTTGAGCGGGTCATGATCATGCTGAACGATTTCGGATTCGGTCCCCAGATCTCCATGAAGATCTATCAGGCCTA
CAAAGAGCAGGCACTTGAGATCATCCACAACAATCCATATAAACTGGTGGAGGATATCGAAGGGATCGGCTTCAATCGTG
CCGATGAACTGGGTTCGAAGATCGGCATCACCGGCAGTCATCCTGACAGGATCAAGGCGGGCTGCTTGTATACGTTGGAG
CAGATGTGTGTGAAGCAGGGTCATGTGTACCTCGAGGCGGAAGAACTTATTGTAAGCGTGAAGGAACTGCTGGAAAAGAG
TCAGTCCGAGCGCATCGAATTCGAGGAGATCTCTGCCCAGGTCGTGGCGCTGGAGGAGGAAGGGAAAGTGGCTGGAGAGG
GAACGAAGATTTACACCCCTTCCCTTTATTTCTCTGAAAAGGGCATCGTCTCGAATATCGAAAGGATCCTTGCCCAGACC
GACTATGAGGACCAGTTCCCCCAATCGGAATTCCTCCTTTCCCTGGGATCGTTGGAGGACCGTTTGGGCGTGCAATATGC
CCCCTCGCAGCGCGAAGCCATCCAAACGGCACTCATGAGCCCGATGCTCCTTTTGACGGGAGGACCCGGAACGGGGAAAA
CCACCGTCATCAACGGGATCGTCGAGCTGTATGCCGATCTTCACGGGTGCTCACTCGATCCGAAGGAGTATAAAGACGAA
CCGTTCCCGGTGCTTCTTGCTGCACCGACGGGAAGGGCCGCCAAACGGATGACGGAATCGACGGGGCTGCCTGCCATGAC
CATCCACCGGTTGCTGGGCTGGAATGGGAAAGAAGGGTTTCAGACGGATGAAGAGCGGACCATTGAAGGGAAATTGCTGA
TCGTCGATGAAGTATCGATGGTGGATACATGGCTTGCCCATCAGCTTCTGAAGGCCCTTCCTGAAAACATCCAGGTGATC
TTCGTTGGCGATGAGGACCAGCTCCCTTCCGTCGGACCTGGACAGGTGCTGAAGGATCTATTGGAATCGGGCAGGGTGCC
GACGGTGCGATTGACGGATATTTATCGTCAGGAAGAAGGCTCTTCCATCATCGACCTTGCCCATCAAATGAAGGACGGAC
GTCTGCCTCATGACCTTGTGAAACAGCAAAAGGATCGCTCTTTCTTCCCTTGCCGTACCAATCAGATCGCCGAAGTGGTT
CAGAAAGTCGTGGAAAACGCGAAGAAGAAGGGTTTCACACCCAAGGATATTCAGGTGCTGGCCCCGATGTACAGAGGCCC
TGCCGGTATCGACCGGTTGAATGTCCTCCTCCAGGAAATCTTCAACAAGAATGATGGAACCAGGAAGGAAATCGCCTTCG
GGGATGTGAAATACCGGATCGGGGATAAAGTGCTGCAGCTTGTCAATCAGCCCGAGAACAATGTCTTCAACGGGGATATC
GGTGAAGTGGTTTCGATCTTCTACGCAAAGGAAAACACAGAGAAGCAGGACATGGTCATCGTTTCCTATGAAGGCACGGA
AGTCACCTATACGCGTCAGGATCTCGGACAGATCACCCATGCCTACTGCTGCTCCATCCATAAATCCCAGGGAAGTGAGT
TTCCCATCGTCATCCTTCCGGTGGTGAAGAGCTATTACCGTATGCTCAGGAGAAATCTTCTATATACGGCCATCACCAGA
AGCAAACAGTTCCTTATCCTGTGCGGGGAAGAGGATGCGTTCCGTATGGGGGTCGAGCGGGAAGAGGATATCATAAGGAA
AACGACACTGAAGGAAAGGCTTCAATCCATGGAAGACATCGTTCCAGCAGATGAGGCTCCCTTCGATCTCATGAACGTGG
ACCCCATGATCGGGATGGAGGGCATCACGCCGTATGACTTCATGACGTGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A165JC19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.516

100

0.63