Detailed information    

insolico Bioinformatically predicted

Overview


Name   scnK   Type   Regulator
Locus tag   SAIN_RS04740 Genome accession   NC_022244
Coordinates   965334..966644 (-) Length   436 a.a.
NCBI ID   WP_021001669.1    Uniprot ID   A0AAP6BNP2
Organism   Streptococcus anginosus C1051     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context


Location: 960334..971644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS04720 (SAIN_0918) - 960553..961797 (-) 1245 WP_003024605.1 NAD(P)H-dependent oxidoreductase -
  SAIN_RS04725 (SAIN_0919) - 961816..962424 (-) 609 WP_003024603.1 NADPH-dependent FMN reductase -
  SAIN_RS04730 (SAIN_0920) - 962444..963373 (-) 930 WP_021001667.1 FAD:protein FMN transferase -
  SAIN_RS04735 (SAIN_0921) nox 963664..965037 (+) 1374 WP_021001668.1 H2O-forming NADH oxidase -
  SAIN_RS04740 (SAIN_0922) scnK 965334..966644 (-) 1311 WP_021001669.1 sensor histidine kinase Regulator
  SAIN_RS04745 (SAIN_0923) scnR 966645..967334 (-) 690 WP_003024592.1 response regulator transcription factor Regulator
  SAIN_RS04750 (SAIN_0924) - 967506..968414 (+) 909 WP_021001670.1 ABC transporter ATP-binding protein -
  SAIN_RS04755 (SAIN_0925) - 968414..969154 (+) 741 WP_003024586.1 ABC transporter permease -
  SAIN_RS04760 (SAIN_0926) - 969151..969879 (+) 729 WP_003024584.1 ABC transporter permease -

Sequence


Protein


Download         Length: 436 a.a.        Molecular weight: 50020.82 Da        Isoelectric Point: 8.2547

>NTDB_id=61768 SAIN_RS04740 WP_021001669.1 965334..966644(-) (scnK) [Streptococcus anginosus C1051]
MDTVKFFTKLLTRYVLLLLALIIGLVFVYGLVFSSYFSFYGKEKPELLYTKIAQSSQQNNFNFDKSSKIEMDKQNTWAMV
LNQDGNIVQSYHLPQQLKRHYTNADMVKFSRWYLEDYPVFSYVRGQQILVLGYPKKHSLAKFNFYANTQFIRNFLSLGLV
FLGIILLLIFILLSRSKLRIKKEMDPIITAVTSLSQGQNIALNEKGNFSEIKTALNETSHILEESNTMKEQWIRGVSHDL
RNPLMLISGYNSQLEQQYGKGKQTEEIENQIQTMKEMISNLNMSYLLDNQKHHSEFSSLDLVAVLRTVIADILNNYETIT
LHFDLPTEAVLVKGEVTLLERAFRNLLLNSIIHSGSNQIDLTYQLSDNKVLIIIADQGDITAQKITELNQKSTNYESHGM
GTVITKQIIKLHQGEIVFLDNQPGLKVIISLPLVKD

Nucleotide


Download         Length: 1311 bp        

>NTDB_id=61768 SAIN_RS04740 WP_021001669.1 965334..966644(-) (scnK) [Streptococcus anginosus C1051]
ATGGATACCGTTAAATTTTTTACTAAGTTATTAACCAGGTATGTTCTATTACTCTTGGCTTTAATCATAGGACTTGTTTT
TGTTTATGGTTTGGTTTTCTCATCCTATTTTAGTTTCTATGGAAAGGAAAAACCGGAACTACTTTACACTAAAATCGCTC
AATCGAGTCAACAGAATAATTTTAATTTTGATAAAAGCAGCAAAATTGAAATGGATAAACAAAATACTTGGGCTATGGTA
CTGAATCAAGATGGCAATATTGTCCAATCTTATCATTTACCTCAACAGCTCAAAAGACATTATACCAATGCTGATATGGT
TAAATTTTCACGTTGGTATTTAGAAGATTACCCTGTTTTCTCCTATGTACGAGGTCAGCAAATTTTAGTTTTGGGCTATC
CTAAAAAGCATTCCTTAGCAAAATTTAATTTCTATGCTAATACACAATTTATTAGGAATTTTCTCAGTTTGGGACTTGTT
TTCTTGGGTATTATTCTTTTACTTATTTTTATTCTTTTGAGCCGATCAAAGCTACGCATTAAAAAGGAAATGGATCCGAT
TATTACTGCTGTCACTTCTTTGTCTCAGGGTCAAAATATTGCTCTTAATGAAAAGGGAAATTTCTCAGAAATTAAGACAG
CCCTTAATGAAACATCTCATATTTTGGAAGAAAGCAACACGATGAAAGAGCAATGGATTAGAGGGGTCAGTCATGATTTA
CGCAATCCTCTTATGCTCATATCAGGTTATAACAGTCAGCTAGAGCAGCAATATGGTAAAGGAAAGCAGACGGAGGAAAT
TGAAAATCAGATTCAAACTATGAAAGAAATGATTTCTAATCTCAATATGAGCTACTTATTGGATAATCAAAAGCATCACT
CCGAATTTTCGAGTCTTGATTTGGTTGCAGTCCTACGAACAGTAATTGCCGATATATTGAATAATTATGAAACAATTACA
CTTCATTTTGATTTGCCTACCGAGGCAGTGTTGGTAAAAGGAGAGGTAACTTTACTAGAAAGAGCTTTTAGAAATCTCTT
GCTTAATAGTATCATACACAGCGGTTCTAACCAGATTGATCTGACTTATCAATTATCTGATAATAAAGTGCTCATCATCA
TTGCGGATCAAGGAGATATTACAGCTCAAAAAATTACTGAGCTAAATCAAAAATCGACTAATTATGAATCACATGGTATG
GGAACGGTTATCACTAAACAAATTATTAAATTACATCAAGGTGAAATTGTTTTTTTAGACAATCAGCCAGGCTTAAAAGT
CATCATTTCTTTACCTTTAGTAAAGGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnK Streptococcus mutans UA159

83.486

100

0.835


Multiple sequence alignment