Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LHV56_RS18535 Genome accession   NZ_CP085397
Coordinates   3897005..3899380 (-) Length   791 a.a.
NCBI ID   WP_252296148.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain KF3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3892005..3904380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LHV56_RS18520 (LHV56_18565) dtd 3893526..3893969 (-) 444 WP_053535817.1 D-aminoacyl-tRNA deacylase -
  LHV56_RS18525 (LHV56_18570) - 3893985..3896183 (-) 2199 WP_034308787.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LHV56_RS18530 (LHV56_18575) - 3896502..3897014 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  LHV56_RS18535 (LHV56_18580) recJ 3897005..3899380 (-) 2376 WP_252296148.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LHV56_RS18540 (LHV56_18585) secDF 3899526..3901787 (-) 2262 WP_252296149.1 protein translocase subunit SecDF -
  LHV56_RS18545 (LHV56_18590) - 3901984..3902289 (-) 306 WP_034308797.1 post-transcriptional regulator -
  LHV56_RS18550 (LHV56_18595) spoVB 3902460..3904022 (+) 1563 WP_095678481.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88929.45 Da        Isoelectric Point: 4.7976

>NTDB_id=617621 LHV56_RS18535 WP_252296148.1 3897005..3899380(-) (recJ) [Peribacillus frigoritolerans strain KF3]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTKLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSTYPFKDLAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSANLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEQLNEEDFTPITNLDGATTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSEDIYSRYPFLQNHPDLVHIENELDAEQLDCFEGHLVLMDMPPS
REYLKRAVANKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=617621 LHV56_RS18535 WP_252296148.1 3897005..3899380(-) (recJ) [Peribacillus frigoritolerans strain KF3]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGATCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCCATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGACGGCGTGACATCGACCACAGTGATGATGACGGCGCTGACGAAATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTCCGCCTTGCCG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTCGATACCGGAATCTCCGCAGTCGCTGAAGCGAAGCTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACCGACCACCATGAACCGGGACCGCAATTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGACAGTACCTATCCATTTAAAGACCTGGCCGGAGTAGGGGTCGCATTTAAGCTGGCACACGCCTTACTTGGGGAAT
TGCCTGAGGATTTGCTTGAAATAGCGGCAATCGGAACGATAGCGGATTTAGTGCCTTTACAAGGGGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCACCGAGGATAAATGCTGTCGGGCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCTGCAAATCTGGAAGAAGCAATGGAACTTGCTAATGAAATCAACGATATCAATAAAGAG
CGTCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CCACGATTGTATTGAGCTATGATCGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGCCGTGAAATGCTGCCTCATTTCGGTGGACATCCTATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCGAAGGAACAACTGAACGAAGAGGACTTCACACCGATTACAA
ACTTGGACGGTGCAACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATTGATTCCGTACAGCTTTCAAGTGTCCGCAAAATTGGGGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTTGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGGAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTACTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGCGGTTGCCAATAAAAACCCTTCCCGTATCTACGCTCACCTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(310-437)

DHH family (DHH)

(82-226)

RecJ OB domain (RecJ_OB)

(456-562)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.855

100

0.55