Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SAIN_RS03280 Genome accession   NC_022244
Coordinates   669500..670345 (+) Length   281 a.a.
NCBI ID   WP_021001513.1    Uniprot ID   A0AAP6EMK6
Organism   Streptococcus anginosus C1051     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 664500..675345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAIN_RS03250 (SAIN_0636) - 664832..665710 (+) 879 WP_003030484.1 F0F1 ATP synthase subunit gamma -
  SAIN_RS03255 (SAIN_0637) atpD 665745..667151 (+) 1407 WP_003030503.1 F0F1 ATP synthase subunit beta -
  SAIN_RS03260 (SAIN_0638) - 667162..667581 (+) 420 WP_003025266.1 F0F1 ATP synthase subunit epsilon -
  SAIN_RS03265 (SAIN_0639) - 667681..667911 (+) 231 WP_041784005.1 DUF1146 family protein -
  SAIN_RS03270 (SAIN_0640) murA 667950..669230 (+) 1281 WP_021001512.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAIN_RS03275 - 669223..669399 (+) 177 WP_041784006.1 DNA-directed RNA polymerase subunit beta -
  SAIN_RS03280 (SAIN_0641) endA 669500..670345 (+) 846 WP_021001513.1 DNA/RNA non-specific endonuclease Machinery gene
  SAIN_RS03285 (SAIN_0642) - 670635..672371 (+) 1737 WP_021001514.1 ABC transporter ATP-binding protein -
  SAIN_RS03290 (SAIN_0643) - 672381..674150 (+) 1770 WP_021001515.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 30911.57 Da        Isoelectric Point: 10.2583

>NTDB_id=61760 SAIN_RS03280 WP_021001513.1 669500..670345(+) (endA) [Streptococcus anginosus C1051]
MARKKSNQKVAQSVVGVFLALVLALGGYSFSNHRTSTSHSDSSAINRSIRMNHAAPSQELAQSVVTESVKRQLEGKIEWN
GSGAFIINENKTTLDAKIASVPYADNKTKLVRGQTVPTVANALLSKATRQYRNREETGNGSTTWTPAGWHQVKHLSGEYH
HAVDRGHLLGYALIGNLKGFDASTSNPKNIAVQTAWANQANTSYSTGQNFYETKIRKALDKNKRVRYRVTLIYANEQDLV
PVGSHIEGKSNDDNLEINVFVPNVQTGIRLNYQTGEVTVTN

Nucleotide


Download         Length: 846 bp        

>NTDB_id=61760 SAIN_RS03280 WP_021001513.1 669500..670345(+) (endA) [Streptococcus anginosus C1051]
ATGGCGAGAAAGAAGTCCAACCAGAAAGTAGCGCAAAGTGTAGTAGGCGTATTTCTTGCACTCGTTCTTGCGCTGGGAGG
TTATTCTTTTAGCAATCATCGCACTAGTACGAGTCATTCTGATAGCTCTGCTATTAATCGAAGTATTCGGATGAATCATG
CAGCACCCAGTCAAGAATTAGCACAGAGTGTTGTGACAGAATCCGTTAAACGACAGCTCGAAGGAAAGATCGAATGGAAT
GGATCGGGAGCCTTTATAATCAACGAAAATAAAACAACATTGGATGCCAAAATTGCAAGCGTTCCTTACGCGGATAATAA
GACCAAGCTTGTTCGAGGTCAGACTGTTCCGACTGTAGCTAATGCTCTTTTATCCAAAGCTACTCGTCAGTATAGGAATC
GTGAAGAAACAGGTAATGGTTCAACAACTTGGACACCTGCTGGCTGGCATCAGGTGAAGCATTTATCGGGTGAATATCAT
CATGCAGTTGACCGTGGACATCTGCTAGGTTATGCCTTGATTGGTAACTTGAAAGGCTTTGATGCTTCGACCAGCAACCC
GAAAAACATCGCTGTGCAAACAGCTTGGGCTAATCAAGCCAATACTAGTTATTCTACGGGTCAAAATTTTTATGAAACAA
AGATACGTAAGGCACTAGACAAAAATAAACGAGTTCGGTATCGGGTGACTTTGATTTATGCCAATGAACAGGATTTGGTG
CCGGTTGGTTCGCATATTGAAGGCAAATCTAATGACGACAATCTGGAAATAAATGTCTTTGTCCCCAACGTACAGACAGG
AATTCGATTAAATTATCAGACAGGAGAAGTGACCGTTACCAACTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

75.664

80.427

0.609
  endA Streptococcus pneumoniae D39

75.664

80.427

0.609
  endA Streptococcus pneumoniae R6

75.664

80.427

0.609
  endA Streptococcus pneumoniae TIGR4

75.664

80.427

0.609

Multiple sequence alignment