Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LIT26_RS20210 Genome accession   NZ_CP085395
Coordinates   4190999..4193374 (-) Length   791 a.a.
NCBI ID   WP_252267254.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CK6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4185999..4198374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT26_RS20195 (LIT26_20210) dtd 4187520..4187963 (-) 444 WP_063594265.1 D-aminoacyl-tRNA deacylase -
  LIT26_RS20200 (LIT26_20215) - 4187979..4190177 (-) 2199 WP_063594266.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LIT26_RS20205 (LIT26_20220) - 4190496..4191008 (-) 513 WP_034308789.1 adenine phosphoribosyltransferase -
  LIT26_RS20210 (LIT26_20225) recJ 4190999..4193374 (-) 2376 WP_252267254.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LIT26_RS20215 (LIT26_20230) secDF 4193520..4195781 (-) 2262 WP_252267255.1 protein translocase subunit SecDF -
  LIT26_RS20220 (LIT26_20235) - 4195978..4196283 (-) 306 WP_034308797.1 post-transcriptional regulator -
  LIT26_RS20225 (LIT26_20240) spoVB 4196454..4198016 (+) 1563 WP_063594269.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88972.61 Da        Isoelectric Point: 4.8587

>NTDB_id=617567 LIT26_RS20210 WP_252267254.1 4190999..4193374(-) (recJ) [Peribacillus frigoritolerans strain CK6]
MLKPKTRWNLRTADENKVAVLAEELHITPLVAALLVNRGLDTIESARSFLFVKNQTFHDPFLLKDMDKAVYRIKEAIQNG
EKIRIFGDYDADGVTSTTVMMTALTRLGADVDFYIPNRFTEGYGPNPMAFRLAAEQGVKVLITVDTGISAVAEAKLAAEL
GMDYILTDHHEPGPQLPEALAIIHPKLEDSSYPFKELAGVGVAFKLAHALLGELPEDLLEIAAIGTIADLVPLQGENRVI
AAKGIEQLRLTRRPGLVALMKVANVQQEALNEESIGFAMAPRINAVGRLGDADPAVDLLMSASLEEAMELANEINDINKE
RQEMVAAMAEEAIAEVEENFPPESNGVLIIGREGWNAGVVGIVASKLVERFYRPTIVLSYDRDKGLAKGSARSIVGFDLF
QSLSQCREMLPHFGGHPMAAGMTLKIEDVQELRDRMNLIAKEELNEEDFTPITNLDGVTTLAEVSIQTIQEMSLLAPFGV
TNPKPKILIDSVQLSSVRKIGANQNHLKVQLEDGEKHKLDGVGFGLGHFVDEIAPHAEVSVIGELSINEWNNMKKPQIFV
QDVSVDHWQLFDYRGKGQAEKWLADIPAQNRKIVIFSKDIYSRYPFLQNHPDLVHIENELDAEQLDCFEGHLVLMDMPPS
REYLKRAVAKKNPSRIYAHLSHEQDHFLSTMPTRDHFKWFYAFLAKKGPLDVKRYGDDLAKYRGWSRDTVDFISKVFFEL
DFVTIENGLIMLTTNAKKRDLSESESYTRKKEQFELEQELVYSSYQQLFDWFNHYLVHEATDLEEETKQWI

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=617567 LIT26_RS20210 WP_252267254.1 4190999..4193374(-) (recJ) [Peribacillus frigoritolerans strain CK6]
ATGTTAAAGCCAAAAACCCGGTGGAACTTGCGAACTGCCGATGAAAACAAAGTTGCTGTACTAGCTGAAGAGCTTCATAT
CACACCTTTGGTTGCAGCCCTGCTTGTGAATCGAGGCCTGGATACGATTGAAAGTGCCCGATCGTTTTTATTTGTAAAAA
ATCAAACTTTTCATGACCCATTTTTATTGAAGGATATGGATAAAGCAGTATATAGAATAAAAGAAGCCATTCAAAATGGA
GAAAAAATACGTATATTCGGTGATTATGATGCGGACGGCGTGACATCGACCACAGTGATGATGACGGCGCTGACGAGATT
GGGGGCCGATGTTGATTTTTATATCCCGAATCGGTTTACAGAAGGATATGGTCCGAATCCGATGGCATTTCGCCTTGCAG
CCGAGCAAGGTGTGAAGGTATTAATAACCGTCGATACCGGAATCTCCGCAGTCGCTGAAGCGAAACTTGCCGCCGAGCTA
GGCATGGATTATATTTTGACTGACCACCATGAACCTGGACCGCAGCTGCCTGAGGCATTGGCGATCATCCATCCTAAACT
TGAGGACAGTTCCTATCCATTTAAAGAACTTGCCGGAGTAGGAGTCGCATTTAAGCTTGCACACGCCTTGCTTGGGGAAT
TGCCTGAGGATTTGCTAGAAATAGCGGCAATCGGGACGATAGCGGATTTAGTGCCTTTACAAGGAGAAAACCGCGTCATT
GCTGCGAAAGGCATCGAGCAGTTACGATTGACTCGCCGCCCGGGACTTGTTGCGTTAATGAAAGTGGCGAATGTTCAGCA
GGAAGCATTGAATGAAGAATCGATCGGCTTTGCAATGGCACCGAGGATCAATGCTGTCGGCCGCCTTGGAGATGCCGATC
CCGCTGTTGATTTATTGATGTCCGCAAGTCTGGAAGAAGCAATGGAACTTGCTAATGAAATCAACGATATCAATAAAGAG
CGGCAGGAAATGGTTGCAGCAATGGCTGAGGAAGCGATTGCTGAAGTCGAGGAAAACTTCCCGCCGGAGTCCAATGGCGT
GCTCATCATCGGCAGGGAAGGCTGGAATGCCGGAGTTGTGGGGATTGTGGCCTCTAAACTTGTTGAACGCTTTTACCGGC
CGACGATTGTATTGAGCTATGATAGGGATAAGGGATTAGCTAAAGGTTCTGCTCGGAGCATCGTTGGTTTCGATCTTTTT
CAAAGTCTTTCCCAATGTCGTGAAATGCTGCCTCATTTCGGTGGACATCCTATGGCAGCTGGAATGACGTTGAAAATAGA
AGATGTTCAGGAGCTTAGGGACCGCATGAACTTGATTGCGAAGGAAGAACTGAACGAAGAGGACTTCACGCCGATTACAA
ACTTGGACGGTGTTACGACTTTAGCTGAAGTTTCCATTCAAACGATTCAGGAAATGAGCTTGCTTGCACCATTTGGGGTT
ACGAATCCCAAGCCGAAGATTTTGATAGATTCCGTACAACTTTCAAGTGTCCGCAAAATTGGTGCCAACCAAAATCACTT
GAAGGTTCAGCTGGAAGATGGTGAAAAACACAAACTTGACGGTGTGGGCTTCGGTCTCGGTCATTTTGTCGATGAAATAG
CTCCGCACGCTGAAGTTTCGGTGATTGGAGAGCTCTCCATCAATGAGTGGAATAATATGAAAAAGCCCCAGATCTTTGTC
CAGGATGTCTCGGTGGACCATTGGCAGTTATTCGATTACCGCGGCAAGGGACAGGCAGAGAAGTGGCTTGCCGACATTCC
TGCACAAAACCGGAAGATCGTCATTTTCTCGAAAGATATTTATAGCAGATATCCATTTTTGCAAAACCATCCAGATCTCG
TTCATATCGAGAATGAACTGGATGCTGAGCAGCTCGACTGCTTCGAAGGGCATTTGGTACTCATGGACATGCCGCCGTCC
AGGGAATATTTGAAACGGGCGGTTGCCAAAAAGAACCCTTCCCGTATCTACGCTCACCTTTCCCATGAACAGGACCATTT
CTTAAGTACGATGCCGACAAGGGATCATTTTAAATGGTTTTATGCCTTCCTTGCCAAGAAGGGTCCGCTTGATGTGAAAA
GATATGGTGATGACCTGGCCAAATATCGCGGCTGGTCAAGAGATACAGTGGATTTCATTTCTAAGGTGTTTTTTGAGCTT
GATTTTGTTACAATAGAAAATGGGTTAATTATGCTCACAACCAATGCGAAAAAACGCGATCTCAGTGAATCTGAATCGTA
TACAAGAAAGAAAGAGCAATTTGAGCTTGAACAAGAGCTTGTTTATTCTTCCTATCAGCAATTATTCGATTGGTTCAATC
ATTATTTAGTTCATGAGGCAACAGACCTTGAGGAGGAAACAAAGCAATGGATTTAA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(569-772)

DHHA1 domain (DHHA1)

(310-437)

RecJ OB domain (RecJ_OB)

(456-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.729

100

0.549