Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIT26_RS19465 Genome accession   NZ_CP085395
Coordinates   4033495..4035900 (-) Length   801 a.a.
NCBI ID   WP_252267093.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CK6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4028495..4040900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT26_RS19440 (LIT26_19455) - 4029966..4031042 (-) 1077 WP_252267088.1 AI-2E family transporter -
  LIT26_RS19445 (LIT26_19460) - 4031269..4031484 (-) 216 WP_034311361.1 hypothetical protein -
  LIT26_RS19450 (LIT26_19465) - 4031474..4031938 (-) 465 WP_252267090.1 PRC-barrel domain-containing protein -
  LIT26_RS19455 (LIT26_19470) - 4032071..4032844 (-) 774 WP_202187075.1 TPM domain-containing protein -
  LIT26_RS19460 (LIT26_19475) - 4032844..4033410 (-) 567 WP_252267092.1 LemA family protein -
  LIT26_RS19465 (LIT26_19480) recD2 4033495..4035900 (-) 2406 WP_252267093.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIT26_RS19470 (LIT26_19485) - 4035937..4036602 (-) 666 WP_127778432.1 tetratricopeptide repeat protein -
  LIT26_RS19475 (LIT26_19490) mnmA 4036724..4037839 (-) 1116 WP_252267094.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIT26_RS19480 (LIT26_19495) - 4037870..4039015 (-) 1146 WP_252267095.1 cysteine desulfurase family protein -
  LIT26_RS19485 (LIT26_19500) - 4039076..4039495 (-) 420 WP_034308657.1 Rrf2 family transcriptional regulator -
  LIT26_RS19490 (LIT26_19505) - 4039823..4040125 (+) 303 Protein_3847 AAA family ATPase -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 90572.32 Da        Isoelectric Point: 4.8233

>NTDB_id=617565 LIT26_RS19465 WP_252267093.1 4033495..4035900(-) (recD2) [Peribacillus frigoritolerans strain CK6]
MSQQDSLDLFSEEKKFMKGSHLVTIFHNEENMYSVVRIRVHETNLNYEEKEAVVTGYFPRMHEDEIYIFYGAMKEHPRFG
LQFHVEHFRKDLPQSKEGIVSYLSGDLFKGIGKKTAESIVETLGEKAISKILAQPSLLDDIPKLSGEKAKGLYDTLVEHQ
GLEQVMIALNQYGFGPQLSMKIYQMYKQDTITMVQGNPYKLVEDIEGIGFGRADELGHQLGISGSHPDRIKAACLYTLES
QCLQDGNIYIEAEQLLEAVKRLLEENKRDRIEFTNISSEIIELTQEGKIVVEDQRIYPPSLFYSEKGIVMNIKRLLAQTE
YEDQFPESEFLLALGELEERLDVSYAPAQKEAIQTALQSPMLILTGGPGTGKTTVIKGIVELYAELHGVSMDINDYKKEG
SDPFPFVLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFSHDEDNQLDGRIVIIDEVSMVDTWLAHQLFKALPENVQ
VILVGDEDQLPSVGPGQVLKDLLASNCVPTVSLEHIYRQADGSSIIELAHEIKKGRLPDDVTKQQEDRSFIRCQTNQIPQ
VIEKVVANARTKGFTAKDIQVLAPMYRGPAGIDALNKMLQEVFNSNANEKRREIKFGDVIYRTGDKVLQLVNQPEEGVFN
GDMGEIVSILFAKENTDSVDKVIISFEGIEVTYTKQDLNQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTA
ITRSKNFLILCGEEDAFRLGIERNDEMRRKTTLREKLREIFSEEEMPVEKGEVHQEASYLDILMHADPMIGMENVTPYDF
M

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=617565 LIT26_RS19465 WP_252267093.1 4033495..4035900(-) (recD2) [Peribacillus frigoritolerans strain CK6]
TTGAGCCAGCAAGATTCGTTGGATTTGTTTTCAGAAGAGAAAAAGTTCATGAAAGGCAGTCATTTAGTGACGATCTTTCA
TAATGAAGAAAATATGTACTCGGTTGTGAGAATTCGTGTGCATGAAACGAATCTGAATTATGAAGAGAAGGAAGCGGTCG
TAACAGGTTATTTTCCAAGGATGCATGAGGATGAGATCTATATTTTTTATGGTGCCATGAAGGAACATCCGCGTTTTGGC
CTTCAATTCCATGTAGAGCATTTTCGCAAGGATTTGCCTCAATCCAAGGAAGGCATCGTCAGTTATTTATCAGGTGACCT
TTTCAAGGGCATTGGGAAAAAAACAGCCGAAAGCATTGTTGAGACACTGGGTGAAAAGGCCATTTCAAAAATTCTGGCTC
AGCCTTCGCTGCTTGATGATATCCCGAAGCTATCAGGGGAAAAGGCAAAGGGCCTCTATGATACATTAGTCGAGCATCAA
GGTCTGGAGCAGGTGATGATCGCCCTGAATCAATATGGCTTCGGTCCGCAGCTGTCGATGAAAATCTATCAAATGTATAA
GCAGGATACGATCACGATGGTTCAGGGAAATCCGTATAAGCTCGTCGAGGATATTGAAGGGATTGGGTTTGGACGGGCGG
ATGAGCTTGGGCATCAGCTGGGCATTTCCGGCAGCCACCCCGACCGAATCAAGGCTGCGTGCTTGTATACGCTTGAATCC
CAATGCCTCCAGGACGGAAATATCTACATAGAAGCCGAGCAGCTATTGGAAGCGGTCAAACGGCTGCTGGAGGAAAATAA
ACGGGATCGCATTGAGTTCACCAACATTTCCTCGGAAATAATCGAATTGACGCAAGAGGGGAAAATAGTTGTCGAGGATC
AACGAATTTATCCGCCTTCGCTTTTCTATTCGGAAAAGGGAATCGTGATGAACATCAAGCGGCTGCTTGCTCAAACCGAG
TATGAGGACCAGTTCCCCGAATCGGAGTTCTTGCTGGCACTTGGGGAGCTGGAAGAGCGGCTGGATGTTTCCTATGCCCC
GGCCCAAAAGGAAGCGATCCAAACAGCCCTGCAATCACCGATGTTAATCTTGACGGGGGGACCGGGTACCGGTAAGACGA
CAGTCATCAAAGGCATCGTTGAGCTATATGCAGAGCTGCATGGAGTATCCATGGACATTAACGATTATAAAAAAGAAGGA
AGCGATCCCTTTCCATTCGTACTTGCGGCTCCTACTGGCCGTGCGGCGAAACGGATGGCCGAGTCGACGGGGCTCCCAGC
AGTTACGATCCACCGTTTGCTGGGGTGGAACGGGAGTGAAGGCTTTTCCCATGATGAGGATAATCAGCTGGATGGCCGTA
TAGTGATCATCGATGAGGTTTCGATGGTGGATACGTGGCTGGCCCATCAATTGTTTAAAGCTCTGCCGGAAAATGTCCAA
GTGATATTGGTTGGTGATGAAGATCAGCTTCCATCTGTTGGCCCTGGGCAGGTTTTAAAGGATTTGCTTGCATCGAATTG
TGTACCGACTGTCAGTCTCGAACATATATATCGTCAAGCTGATGGGTCATCGATCATTGAATTGGCCCATGAAATCAAAA
AAGGAAGGCTTCCGGATGATGTCACGAAACAGCAGGAAGATCGATCGTTCATTCGCTGCCAAACCAATCAAATCCCCCAA
GTAATCGAGAAAGTGGTTGCCAATGCCAGGACGAAAGGCTTCACGGCCAAAGATATACAGGTGCTGGCTCCCATGTATAG
AGGGCCTGCCGGAATTGATGCACTGAATAAAATGCTTCAGGAAGTGTTCAATAGCAATGCGAATGAAAAGCGGCGGGAAA
TAAAATTCGGAGATGTGATATATAGAACCGGAGATAAGGTGCTTCAACTGGTGAACCAGCCAGAGGAAGGTGTCTTTAAT
GGCGATATGGGGGAAATCGTGTCCATATTGTTCGCTAAAGAAAATACCGATTCTGTCGATAAAGTGATCATATCGTTCGA
AGGCATCGAAGTGACTTACACGAAGCAGGATTTGAACCAGATTACACATGCCTATTGCTGCTCCATCCATAAGTCGCAGG
GAAGCGAATTCCCCATCGTCATTTTACCTGTAGTGAAAAGTTATTACCGGATGCTCCGCCGTAATTTATTGTATACGGCG
ATTACCCGCAGTAAAAATTTCTTGATCCTATGTGGTGAAGAAGATGCATTCCGTTTAGGGATCGAGCGTAATGATGAGAT
GCGCCGGAAAACGACTTTGCGTGAAAAGCTGCGGGAGATCTTTAGTGAGGAAGAAATGCCGGTTGAAAAGGGAGAGGTGC
ATCAAGAGGCAAGTTATCTTGATATTCTTATGCATGCTGACCCGATGATCGGGATGGAGAATGTCACGCCATATGATTTT
ATGTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-555)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.547

100

0.625