Detailed information NTG0617523

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LIT38_RS21180
• Genome accession: NZ_CP085394
• Coordinates: 4190464..4192890 (-)
• Length: 808 a.a.
• NCBI ID: WP_243504987.1
• Uniprot ID: -
• Organism: Bacillus sp. CMF12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4185464..4197890

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIT38_RS21150 (LIT38_21180)	-	4187844..4188932 (-)	1089	WP_243504982.1	AI-2E family transporter	-
LIT38_RS21155 (LIT38_21185)	-	4189090..4189224 (-)	135	WP_206838874.1	YrzQ family protein	-
LIT38_RS21160 (LIT38_21190)	-	4189250..4189441 (-)	192	WP_221878454.1	hypothetical protein	-
LIT38_RS21165 (LIT38_21195)	-	4189457..4189927 (-)	471	WP_243504984.1	PRC-barrel domain-containing protein	-
LIT38_RS21170 (LIT38_21200)	-	4190049..4190201 (-)	153	WP_221878456.1	hypothetical protein	-
LIT38_RS21175 (LIT38_21205)	-	4190239..4190400 (-)	162	WP_243504985.1	hypothetical protein	-
LIT38_RS21180 (LIT38_21210)	recD2	4190464..4192890 (-)	2427	WP_243504987.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LIT38_RS21185 (LIT38_21215)	-	4192918..4193583 (-)	666	WP_243504988.1	tetratricopeptide repeat protein	-
LIT38_RS21190 (LIT38_21220)	mnmA	4193700..4194815 (-)	1116	WP_243504989.1	tRNA 2-thiouridine(34) synthase MnmA	-
LIT38_RS21195 (LIT38_21225)	-	4195011..4196153 (-)	1143	WP_243504991.1	cysteine desulfurase family protein	-
LIT38_RS21200 (LIT38_21230)	-	4196223..4196642 (-)	420	WP_009333072.1	Rrf2 family transcriptional regulator	-
LIT38_RS21205 (LIT38_21235)	-	4196642..4197328 (-)	687	WP_243504993.1	YitT family protein	-

Sequence

Protein

• Length: 808 a.a.
• Molecular weight: 91387.48 Da
• Isoelectric Point: 4.9786

>NTDB_id=617523 LIT38_RS21180 WP_243504987.1 4190464..4192890(-) (recD2) [Bacillus sp. CMF12]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
VQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSILDKVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILEM
ESMQAGHVYIEARPLLQSVKKLLEENKRDTIEYRNISNELIKLEEEGKIMAEGQKIYLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLEPKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGIEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPANISAQQTDRSFIKCQPGQIADVV
EKVVLNAQKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGTRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEAAYTRQDLNQITHAYCCSVHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKIGVERADEQARLTTLSEKLRDAIPLDDETVQEDTAESSLPETLTLEEKLLHADPMIGMGNITPY
DFMEKEYS

Nucleotide

• Length: 2427 bp

>NTDB_id=617523 LIT38_RS21180 WP_243504987.1 4190464..4192890(-) (recD2) [Bacillus sp. CMF12]
ATGGAGAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGAAAGTTCATAAAGGGCAGACATCTTGTCACAATCTTTCA
TAATGAACAAAACTTATATACGGTTGTGCGCATTCGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACAGGCTATCTGCCAAAGATGCATGAGCATGAAACTTATATTTTCTATGGTGAATTCAAAGATCACCCTAAGTTCGGC
GTCCAATTCCACGCAAGCCATTACAGGAAAGATCTTCCCCAGACCAAGCAAGGTGTAGCCAATTATTTATCAAGCGAATT
ATTTAAAGGGATTGGAAAGAAAACCGCCGAGCAAATCGTCGAGACACTTGGCGAAGATGCGATCACACGCATTCTTAATC
AGCCGTCTATCCTCGATAAGGTTCCAAAACTGTCACCTGAAAAAGCTAAATTGCTTTACGACACGCTTATGGAACATCAA
GGGCTTGAGCAAGCCATGATTGCACTTAATCAATATGGTTTTGGCCCACAGCTTTCCATGAGAATTTATCAAGTGTATAA
AGAAATGACGATCGAAGTCGTTCAAAACAATCCTTATAAGCTGGTTGAGGATATAGAAGGAGTCGGCTTTGGCCGTGCAG
ATGAACTGGGATATCAAATCGGCATATCAGGAAATCATCCTGATCGTATAAAAGCAGCCTGCCTCTACATACTTGAAATG
GAAAGCATGCAGGCAGGCCATGTCTATATTGAAGCAAGACCTCTTCTGCAAAGTGTGAAGAAGCTTTTAGAAGAAAATAA
GCGTGATACCATTGAATACAGGAATATATCCAATGAACTCATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AAAAGATATACCTTCCATCCCTATATTTTTCTGAAAAGGGACTTGTAACCAATATTAAACGGATCCTTAAGCAAACACAG
TATGATGAACAGTTCCCGGAGTCGGAATTTCTTTTGGCCCTTGGCAATCTGGAGGAACGTCTGGGTGTTCAGTATGCCCC
AACCCAAAAGGAAGCTATTCAAACAGCTCTTATGTCTCCTATGCTGATACTGACTGGCGGCCCGGGTACAGGAAAAACAA
CTGTTATAAAGGGAATTGTTGAATTATATGCCGAACTGCATGGCTGCTCCCTTGAACCAAAAGACTATAAAAAGGAAGAG
CCTTTTCCCTTCCTGCTGGCTGCACCAACAGGAAGGGCTGCAAAACGGATGGCCGAGTCAACAGGGCTGCCCGCTGTAAC
CATTCACCGCCTTCTTGGCTGGAATGGGATCGAAGGGTTTGACCGTCACGAAGAGAGTCCATTGGAAGGCAGGATTTTAA
TTGTTGATGAGACATCAATGGTTGATGTTTGGCTTGCTAACCAGCTTTTCAAGGCTCTCCCTGAAAATATGCAGGTAATC
CTTGTGGGGGATGAAGATCAGCTGCCTTCAGTGGGGCCAGGCCAGGTTTTGAAAGATCTTTTGCGTTCAGAACGTATTCC
TACTGTTCGCCTTACAGATATTTACAGGCAGGCTGAAGGATCCTCAATCATTGAATTGGCCCACGAAATGAAAAAAGGCA
AACTTCCGGCGAACATTTCTGCACAGCAGACTGATCGTTCCTTTATTAAATGCCAGCCGGGCCAAATTGCGGATGTTGTT
GAAAAGGTTGTCCTGAATGCCCAAAAGAAAGGGTATTCTTCGAAAGATATTCAGGTGCTTGCCCCTATGTACCGTGGACC
CGCAGGAATTGACAGGCTAAACGAGATATTGCAGGAAATTCTGAATCCAAATCCTGATGGAACGAGGAAAGAGTTGTCCT
TTGGTGATGTGAAATACAGAATCGGCGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAAAATAATGTGTTTAATGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTCGATGGTGC
GGAAGCTGCATACACAAGGCAGGATCTCAATCAGATTACTCATGCCTACTGCTGTTCTGTCCATAAATCCCAGGGAAGTG
AATTCCCTATAGTCATTTTGCCTGTTGTTAAAAGCTATTACAGGATGCTTAGAAGAAATCTTCTTTATACCGCCATTACC
CGCAGCAGACAATTTTTAATACTGTGCGGTGAAGAAGATGCGTTAAAAATCGGTGTGGAACGTGCGGATGAACAGGCACG
CCTGACAACTTTATCTGAAAAGCTTAGAGATGCAATCCCGTTAGATGATGAAACAGTGCAGGAAGATACAGCTGAATCTT
CTCTGCCGGAAACACTAACCCTCGAGGAAAAGCTTCTCCACGCCGATCCCATGATAGGAATGGGAAATATAACACCGTAT
GATTTTATGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (345-552)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-249)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (681-729)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (593-664)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	61.982	98.639	0.611