Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LIT38_RS09420 Genome accession   NZ_CP085394
Coordinates   1829770..1830549 (+) Length   259 a.a.
NCBI ID   WP_243508403.1    Uniprot ID   -
Organism   Bacillus sp. CMF12     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824770..1835549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT38_RS09400 (LIT38_09415) trmFO 1825321..1826628 (+) 1308 WP_252217716.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LIT38_RS09405 (LIT38_09420) xerC 1826693..1827595 (+) 903 WP_243508401.1 tyrosine recombinase XerC -
  LIT38_RS09410 (LIT38_09425) hslV 1827667..1828209 (+) 543 WP_009330767.1 ATP-dependent protease subunit HslV -
  LIT38_RS09415 (LIT38_09430) hslU 1828228..1829631 (+) 1404 WP_243508402.1 HslU--HslV peptidase ATPase subunit -
  LIT38_RS09420 (LIT38_09435) codY 1829770..1830549 (+) 780 WP_243508403.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LIT38_RS09425 (LIT38_09440) flgB 1830980..1831375 (+) 396 WP_252217719.1 flagellar basal body rod protein FlgB -
  LIT38_RS09430 (LIT38_09445) flgC 1831378..1831830 (+) 453 WP_252217722.1 flagellar basal body rod protein FlgC -
  LIT38_RS09435 (LIT38_09450) fliE 1831843..1832148 (+) 306 WP_252217733.1 flagellar hook-basal body complex protein FliE -
  LIT38_RS09440 (LIT38_09455) fliF 1832283..1833893 (+) 1611 WP_252217736.1 flagellar basal-body MS-ring/collar protein FliF -
  LIT38_RS09445 (LIT38_09460) fliG 1833906..1834922 (+) 1017 WP_206836377.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28956.25 Da        Isoelectric Point: 4.6749

>NTDB_id=617510 LIT38_RS09420 WP_243508403.1 1829770..1830549(+) (codY) [Bacillus sp. CMF12]
MDLLTKTRKINAMLQRAAGKPVNFKEMSETLSDVIEANIFVVSRRGKLLGFAVNQQIENERMKQMLADRQFPEEYTKNLF
NIQETSSNLDVESEYTAFPVENKDLFANGLTTIVPIIGGGERLGTLILARLLEQFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKSN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=617510 LIT38_RS09420 WP_243508403.1 1829770..1830549(+) (codY) [Bacillus sp. CMF12]
ATGGATTTATTAACAAAAACAAGAAAAATTAATGCAATGCTTCAAAGAGCTGCCGGAAAACCGGTTAACTTCAAGGAAAT
GTCAGAAACACTAAGTGATGTAATCGAAGCAAATATCTTCGTAGTGAGCCGCAGAGGTAAACTGCTTGGATTTGCTGTAA
ATCAGCAAATTGAAAATGAGCGCATGAAGCAAATGCTGGCAGATCGTCAATTCCCTGAGGAATACACTAAAAATTTATTT
AATATCCAGGAAACTTCATCAAATCTGGATGTGGAAAGTGAATATACTGCATTCCCAGTTGAAAACAAAGATCTTTTCGC
AAATGGTTTGACTACAATTGTTCCTATCATCGGCGGCGGTGAGCGTCTGGGCACATTAATTCTTGCCAGATTGCTGGAAC
AGTTCCATGATGATGATTTAATTCTTGCTGAATATGGTGCTACTGTTGTTGGTATGGAAATCCTTCGTGAAAAAGCGGAA
GAAATTGAAGAAGAAGCACGTAGCAAGGCGGTTGTGCAAATGGCAATCAGTTCTCTTTCATACAGTGAGCTGGAAGCGAT
CGAGCATATCTTTGAAGAGCTTAACGGCAACGAAGGGCTTCTTGTAGCATCGAAAATCGCTGATCGTGTAGGCATTACGC
GCTCTGTAATCGTAAATGCCCTAAGAAAACTGGAAAGTGCAGGAGTTATTGAATCTCGTTCATTAGGTATGAAAGGTACT
TATATCAAAGTTCTTAACGATAAGTTCCTGGTTGAATTAGAAAAACTTAAATCAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

88.031

100

0.88
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.583

95.367

0.463