Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LIS77_RS19280 Genome accession   NZ_CP085390
Coordinates   3782117..3784486 (-) Length   789 a.a.
NCBI ID   WP_252219499.1    Uniprot ID   -
Organism   Cytobacillus firmus strain CK19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3777117..3789486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS19265 (LIS77_19290) dtd 3778494..3778934 (-) 441 WP_048010352.1 D-aminoacyl-tRNA deacylase -
  LIS77_RS19270 (LIS77_19295) - 3778949..3781144 (-) 2196 WP_252219496.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LIS77_RS19275 (LIS77_19300) - 3781614..3782126 (-) 513 WP_048010354.1 adenine phosphoribosyltransferase -
  LIS77_RS19280 (LIS77_19305) recJ 3782117..3784486 (-) 2370 WP_252219499.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LIS77_RS19285 (LIS77_19310) - 3784646..3784963 (-) 318 WP_048010356.1 lipopolysaccharide assembly LapA domain-containing protein -
  LIS77_RS19290 (LIS77_19315) - 3784988..3785890 (-) 903 WP_222497680.1 cation diffusion facilitator family transporter -
  LIS77_RS19295 (LIS77_19320) secDF 3786025..3788289 (-) 2265 WP_252219502.1 protein translocase subunit SecDF -
  LIS77_RS19300 (LIS77_19325) - 3788578..3788874 (-) 297 WP_222497678.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88104.38 Da        Isoelectric Point: 5.0126

>NTDB_id=617416 LIS77_RS19280 WP_252219499.1 3782117..3784486(-) (recJ) [Cytobacillus firmus strain CK19]
MLHSRTRWNVRQTEEDKVQRLSKELNISPLAASLLINRGMDTVDSARYFLMDNEQEFHDPFLMTDMAIAVSRIKEAIEKQ
EPILIFGDYDADGVTSTSVMMMALKDLGADVQFYIPNRFTEGYGPNIPAFEHAAEIGIRLIITVDTGISAVNEAKAAKEL
GMDLIITDHHEPGPDLPEALAIVHPKHPESRYPFRELAGVGVAFKLAHALYGEMPEHLLEIAAIGTIADLVSLTGENRLI
AKRGIQKLKSTKNTGLNALFKAARIELPSISEETIGFTIGPRLNAAGRLESADPAVDLLLTNDPYEAQAVAEEIEMLNKE
RQSIVNDIAAQAVHEVETNFPISENSVIVVGKEGWNAGVIGIVASKLVEKFYRPAIVLSYDSEKGLAKGSARSIEGFDLF
KNLSECRDILPHFGGHPMAAGMTLSIDSVDDLRSRLNTLANEQLSEEDFIPVTSIDGVFHLKDINLSSIAEMQLLAPFGM
GNAKPKVMIKDANIAAMRKIGSEQNHIKVTIENDGSSLDGIGFGLGHLHEHISPYSKLSVIGELSINEWNNIKKPQIFLQ
DMAVNSWQLFDIRSLKRLERLQSVIPEANTTWLFFNEEYISKYKPFAGENMVKITSAEDAEDIKIEGSNIVLADLPPSKE
ILAQVFSGKKPARIYAHFYKEDSDFFSTLPTRDHFKWYFALIAKKGSIDIRRHGNDIAKHKGWSRETVDFMSQVFFELEF
VKINNGVISLNNTSTKRDLADSQTYQLKQAQYTLESDLLYSSFQQLKDWFDEVMQGAVKLEEAKEEKWT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=617416 LIS77_RS19280 WP_252219499.1 3782117..3784486(-) (recJ) [Cytobacillus firmus strain CK19]
ATGTTACATTCAAGAACGCGATGGAATGTTCGGCAAACAGAGGAGGATAAAGTACAGCGGCTTTCAAAGGAACTGAATAT
TTCTCCTCTTGCAGCATCGCTTTTAATTAATCGCGGAATGGATACCGTTGATTCAGCACGGTATTTTCTGATGGATAATG
AGCAGGAATTTCATGATCCTTTTTTAATGACTGATATGGCAATTGCTGTTTCCAGAATAAAAGAAGCTATTGAAAAACAG
GAACCTATTTTAATTTTTGGTGATTACGATGCGGATGGTGTGACCAGCACTTCTGTCATGATGATGGCACTTAAAGATCT
CGGTGCTGATGTCCAATTCTACATACCGAATCGTTTTACGGAGGGCTATGGGCCAAATATCCCGGCTTTTGAACATGCAG
CCGAAATTGGCATCCGTTTAATTATTACTGTAGATACTGGAATCTCTGCTGTAAATGAAGCAAAAGCTGCAAAAGAGCTT
GGAATGGATTTGATCATTACAGATCATCATGAGCCCGGCCCCGATCTTCCTGAAGCATTGGCCATTGTGCATCCTAAGCA
TCCGGAGAGCAGATACCCGTTCCGGGAACTTGCCGGTGTTGGGGTAGCATTTAAGCTTGCACATGCGCTTTATGGTGAAA
TGCCTGAACACCTTTTGGAGATAGCTGCGATCGGCACAATTGCTGATCTTGTTTCTTTAACAGGAGAAAACAGACTTATT
GCCAAGCGCGGGATTCAAAAGCTGAAATCAACTAAAAATACAGGTTTGAATGCTTTGTTTAAAGCGGCACGAATCGAGCT
TCCATCCATTAGTGAGGAAACGATCGGCTTTACAATCGGCCCTCGCCTCAATGCAGCAGGAAGGCTTGAAAGCGCGGATC
CTGCTGTGGATCTGCTTTTGACAAATGATCCTTATGAAGCACAAGCCGTTGCCGAAGAAATTGAAATGCTGAATAAAGAA
AGGCAATCTATTGTCAATGACATTGCAGCGCAAGCGGTTCATGAGGTTGAAACAAATTTCCCAATCAGTGAGAATTCAGT
TATTGTTGTCGGGAAAGAAGGCTGGAACGCCGGGGTAATCGGAATAGTAGCTTCGAAGCTTGTCGAAAAGTTTTACCGCC
CGGCCATTGTCCTTAGTTATGACAGTGAAAAAGGGCTGGCGAAGGGTTCAGCAAGAAGTATAGAAGGTTTTGATCTGTTC
AAGAATCTTTCTGAATGCCGGGATATCCTGCCTCACTTTGGAGGTCACCCGATGGCAGCGGGTATGACTTTATCCATTGA
TTCGGTTGATGATCTGAGAAGCAGACTGAATACTCTTGCAAATGAACAGCTGAGTGAGGAAGATTTTATTCCTGTAACCT
CTATAGATGGGGTTTTCCATTTAAAAGATATCAATCTTTCTTCCATTGCGGAAATGCAGCTGCTTGCTCCATTCGGGATG
GGAAATGCGAAACCAAAAGTAATGATAAAAGATGCTAATATTGCAGCTATGAGAAAGATCGGATCTGAACAGAACCATAT
TAAAGTCACAATCGAGAATGATGGATCTTCACTTGATGGCATCGGTTTTGGACTTGGGCATTTGCATGAACATATTTCAC
CATACTCCAAGCTGTCCGTTATTGGTGAATTATCCATTAATGAATGGAATAATATTAAAAAACCGCAAATTTTCCTGCAG
GATATGGCAGTCAACTCCTGGCAGCTCTTTGATATCCGGAGTTTAAAACGGCTTGAAAGGCTCCAAAGTGTCATTCCTGA
GGCAAACACAACCTGGTTATTTTTTAATGAGGAATATATTTCTAAATATAAACCATTTGCAGGGGAAAACATGGTGAAAA
TAACATCTGCAGAAGACGCAGAAGACATAAAAATAGAAGGCTCAAATATTGTACTGGCTGATTTGCCGCCTTCAAAGGAA
ATTCTTGCACAGGTTTTCTCCGGGAAAAAACCTGCCAGAATTTATGCTCATTTCTATAAAGAAGACAGTGACTTTTTTAG
CACATTACCAACAAGAGACCATTTTAAATGGTACTTTGCCCTGATTGCTAAAAAAGGTTCAATTGATATCAGGCGTCATG
GGAATGATATAGCGAAGCATAAAGGATGGAGCAGAGAGACAGTAGATTTTATGTCTCAAGTGTTTTTTGAATTGGAATTT
GTTAAAATAAATAATGGTGTCATTTCGTTAAACAATACATCCACTAAACGTGATTTAGCTGATTCACAAACTTATCAGCT
TAAACAGGCACAATACACTCTTGAGAGCGATTTGCTCTATTCATCCTTTCAGCAGCTCAAAGACTGGTTTGATGAAGTTA
TGCAAGGGGCTGTAAAACTTGAGGAGGCAAAGGAAGAAAAATGGACTTAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

DHHA1 domain (DHHA1)

(316-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.155

98.352

0.542