Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LIS77_RS19185 Genome accession   NZ_CP085390
Coordinates   3760159..3762585 (-) Length   808 a.a.
NCBI ID   WP_248348345.1    Uniprot ID   -
Organism   Cytobacillus firmus strain CK19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3755159..3767585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS77_RS19160 (LIS77_19185) - 3757740..3758828 (-) 1089 WP_222497703.1 AI-2E family transporter -
  LIS77_RS19165 (LIS77_19190) - 3758951..3759085 (-) 135 WP_222497702.1 YrzQ family protein -
  LIS77_RS19170 (LIS77_19195) - 3759111..3759302 (-) 192 WP_035331236.1 hypothetical protein -
  LIS77_RS19175 (LIS77_19200) - 3759318..3759788 (-) 471 WP_222497700.1 PRC-barrel domain-containing protein -
  LIS77_RS19180 (LIS77_19205) - 3759910..3760059 (-) 150 WP_197087702.1 hypothetical protein -
  LIS77_RS19185 (LIS77_19210) recD2 3760159..3762585 (-) 2427 WP_248348345.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LIS77_RS19190 (LIS77_19215) - 3762612..3763277 (-) 666 WP_252219472.1 tetratricopeptide repeat protein -
  LIS77_RS19195 (LIS77_19220) mnmA 3763394..3764509 (-) 1116 WP_222497694.1 tRNA 2-thiouridine(34) synthase MnmA -
  LIS77_RS19200 (LIS77_19225) - 3764569..3765711 (-) 1143 WP_252219475.1 cysteine desulfurase family protein -
  LIS77_RS19205 (LIS77_19230) - 3765779..3766198 (-) 420 WP_009333072.1 Rrf2 family transcriptional regulator -
  LIS77_RS19210 (LIS77_19235) - 3766198..3766884 (-) 687 WP_197248242.1 YitT family protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91335.55 Da        Isoelectric Point: 4.9782

>NTDB_id=617415 LIS77_RS19185 WP_248348345.1 3760159..3762585(-) (recD2) [Cytobacillus firmus strain CK19]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDNVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVIQNNPYKLVEDIDGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESMQAGHVYIEAKPLLQSVKKLLEENKRDLIEYKDISNELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPENITAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELPFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKMGVERADEQARLTTLSEKLRDAILFNDETGLEDTAVSSLAETLSLEEKLLQADPMIGMGKITPY
DFMEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=617415 LIS77_RS19185 WP_248348345.1 3760159..3762585(-) (recD2) [Cytobacillus firmus strain CK19]
ATGGAAAAACAGGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACCGGCTATCTTCCAAAGATGCATGAGCATGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGATGCGATTACTCGTATTCTAAACC
AGCCGTCCCTCCTCGATAATGTTCCCAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGATACGCTGATGGAACACCAG
GGCCTTGAGCAAGCCATGATCGCTCTTAATCAATATGGGTTTGGCCCGCAGCTTTCCATGAGAATTTATCAGGTGTATAA
AGAAATGACGATTGAAGTCATTCAAAATAACCCTTATAAGCTGGTTGAGGATATAGACGGGGTCGGCTTTGGCCGAGCTG
ACGAGCTGGGATATCAAATTGGCATATCAGGCAATCATCCTGACCGTATTAAAGCTGCCTGCCTCTACATACTTGAAACG
GAGAGTATGCAGGCAGGCCATGTTTATATTGAAGCAAAGCCTCTTCTGCAAAGTGTGAAGAAGCTGCTGGAAGAAAATAA
ACGTGATTTGATTGAATACAAGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCCGAAAAAGGACTAGTAACCAATATTAAGCGGATCCTCAAGCAAACCCAG
TATGACGAACAGTTTCCGGAGTCGGAATTTCTTTTGGCCCTTGGAAATTTGGAGGAGCGCCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATATTGACCGGCGGGCCGGGGACAGGAAAAACAA
CCGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACTGAAAGATTATAAAAAGGAAGAG
CCCTTCCCCTTCCTGCTGGCAGCCCCTACAGGAAGGGCTGCAAAACGGATGGCGGAATCAACAGGGTTGCCAGCTGTAAC
GATTCACCGTCTTCTTGGATGGAATGGGTCTGAAGGATTTGACCGGCACGAGGAGAGTCCGCTGGAAGGCAGGATTTTAA
TTGTAGATGAAACATCAATGGTTGATGTTTGGCTTGCAAATCAGCTTTTCAAGGCTCTTCCTGAAAATATGCAAGTAATA
CTGGTTGGTGACGAAGACCAGCTGCCTTCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTTTGCGCTCAGAACGCATTCC
AACTGTCCGTTTAACAGATATATACAGGCAGGCTGAAGGGTCTTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGAGAACATCACTGCGCAGCAATCGGACCGTTCATTTATCAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAAAAGGTTGTCCTTAATGCCAAAAAGAAAGGTTATTCATCTAAAGATATTCAGGTGCTTGCCCCAATGTACCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGATCGAGGAAAGAGCTGCCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAAGTCCTTCAGCTTGTCAACCAGCCTGAGAACAATGTTTTTAACGGGGAT
ATGGGTGAGATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTTGATGGTGC
GGAAGCTACATACACAAGGCAGGATTTGAACCAGATCACTCATGCCTACTGCTGCTCTGTCCATAAATCGCAGGGAAGTG
AATTTCCGATTGTCATAATGCCTGTTGTTAAAAGCTATTACAGGATGCTGAGAAGGAATCTCCTTTATACCGCCATTACC
CGCAGCAGACAATTTTTGATATTGTGCGGCGAAGAAGATGCATTAAAAATGGGTGTGGAACGTGCGGATGAACAGGCACG
CTTGACCACTCTTTCTGAAAAGCTGAGAGATGCAATCCTGTTTAATGATGAAACAGGGCTTGAAGATACAGCGGTGTCTT
CTCTTGCGGAAACACTTTCTCTCGAAGAAAAGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAAAATAACACCGTAT
GATTTTATGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(345-552)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.731

98.639

0.609