Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LIS79_RS08280 Genome accession   NZ_CP085389
Coordinates   1601439..1602218 (+) Length   259 a.a.
NCBI ID   WP_007499612.1    Uniprot ID   A0A9X0FX88
Organism   Bacillus altitudinis strain CMF5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1596439..1607218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS08260 (LIS79_08260) trmFO 1597143..1598447 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LIS79_RS08265 (LIS79_08265) xerC 1598510..1599427 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  LIS79_RS08270 (LIS79_08270) hslV 1599442..1599987 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  LIS79_RS08275 (LIS79_08275) hslU 1600004..1601404 (+) 1401 WP_017367242.1 HslU--HslV peptidase ATPase subunit -
  LIS79_RS08280 (LIS79_08280) codY 1601439..1602218 (+) 780 WP_007499612.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LIS79_RS08285 (LIS79_08285) flgB 1602506..1602895 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  LIS79_RS08290 (LIS79_08290) flgC 1602895..1603347 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  LIS79_RS08295 (LIS79_08295) fliE 1603359..1603676 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  LIS79_RS08300 (LIS79_08300) fliF 1603727..1605319 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  LIS79_RS08305 (LIS79_08305) fliG 1605331..1606347 (+) 1017 WP_008344808.1 flagellar motor switch protein FliG -
  LIS79_RS08310 (LIS79_08310) fliH 1606340..1607104 (+) 765 WP_017359090.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28976.19 Da        Isoelectric Point: 4.6467

>NTDB_id=617344 LIS79_RS08280 WP_007499612.1 1601439..1602218(+) (codY) [Bacillus altitudinis strain CMF5]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENARMKKMLEDRQFPEEYTKSLF
NVPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=617344 LIS79_RS08280 WP_007499612.1 1601439..1602218(+) (codY) [Bacillus altitudinis strain CMF5]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAACCGGTTAATTTTAAAGAAAT
GGCAGAAACACTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTACTCCATTA
ACCAGCAGATTGAAAATGCACGTATGAAAAAAATGCTGGAAGATCGTCAGTTCCCTGAAGAATATACAAAAAGCTTATTC
AATGTCCCTGAAACATCTTCAAACCTTGACATCAACAGTGAGTACACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGACCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAGGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTTGGAATGGAGATTCTTCGTGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATACAGTGAACTTGAAGCGAT
TGAACATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATTAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.525

100

0.965
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.031

98.069

0.471