Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LJD78_RS00395 Genome accession   NZ_CP085326
Coordinates   99808..101661 (-) Length   617 a.a.
NCBI ID   WP_404802097.1    Uniprot ID   -
Organism   Bifidobacterium pseudolongum strain 46-D-6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 94808..106661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJD78_RS00370 (LJD78_00370) - 96416..97084 (-) 669 WP_101441922.1 phosphatase PAP2 family protein -
  LJD78_RS00375 (LJD78_00375) - 97193..97597 (+) 405 WP_101428214.1 hypothetical protein -
  LJD78_RS00380 (LJD78_00380) - 97782..97973 (-) 192 WP_225531738.1 VOC family protein -
  LJD78_RS00385 (LJD78_00385) - 97993..98166 (-) 174 WP_225531739.1 VOC family protein -
  LJD78_RS00390 (LJD78_00390) - 98499..99800 (+) 1302 WP_225531740.1 polysaccharide deacetylase family protein -
  LJD78_RS00395 (LJD78_00395) rcrQ 99808..101661 (-) 1854 WP_404802097.1 ABC transporter ATP-binding protein Regulator
  LJD78_RS00400 (LJD78_00400) - 101710..103629 (-) 1920 WP_225531741.1 ABC transporter ATP-binding protein -
  LJD78_RS00405 (LJD78_00405) - 103639..104202 (-) 564 WP_051592110.1 MarR family winged helix-turn-helix transcriptional regulator -
  LJD78_RS00410 (LJD78_00410) - 104475..105995 (-) 1521 WP_225531742.1 amino acid permease -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67808.22 Da        Isoelectric Point: 5.0544

>NTDB_id=617217 LJD78_RS00395 WP_404802097.1 99808..101661(-) (rcrQ) [Bifidobacterium pseudolongum strain 46-D-6]
MPGGMGPHGPRGGAPTEKADDLGGALKDLMRFSRRYIPAIIVALVLGVVGTVCQIIGPDYLGDMTDEITKGLPAMINGKP
VLGAIDMAAVTRIGWTLVALYVAYALCSYVQSWMMATVTQRTAQRLRSAIDVKMNKLPLKYFDEHSNGDVMSRITNDVDA
VGQTLGQSLGSLITSVTLFFGALIMMFANNWLLALCAIAASLLGMVLMLVVMRFSQRYFVKQQAALGDVNGHVEEMYSGH
TVVKAFGGEADAIRRFERYNNDLYESGWKSQFLSGLMMPMMNLVGNLGYVVVCVVGAWLAMSGRIEFGVIVAFMLYIRFF
TQPLSQFAQAFQNLQRCAAGAERVFTFLNEPELADESSKQPLLGMGDDGEITPVEGRVSFEHVRFGYDADRMIIHDFSAD
VQPGQKVAIVGPTGAGKTTMVNLLMRFYEINGGKISIDGIDTKDVPRWNVHDQFSMVLQDTWVFQGTVRENIVYAKEGVS
DEQVIAACKAVGLHRYIMSLPNGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQTAMDRLT
EGRTSFVIAHRLSTIRDADMILVMRDGDIVERGTHDELLARGGFYADIYNAQFSLAQ

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=617217 LJD78_RS00395 WP_404802097.1 99808..101661(-) (rcrQ) [Bifidobacterium pseudolongum strain 46-D-6]
ATGCCAGGAGGAATGGGGCCGCACGGCCCGCGCGGTGGTGCGCCCACCGAAAAAGCGGATGATCTGGGCGGCGCGCTCAA
GGACCTGATGCGGTTCAGCCGCCGGTATATCCCGGCGATCATCGTCGCGCTCGTGCTGGGCGTGGTGGGCACGGTCTGCC
AGATCATCGGCCCGGATTATCTGGGTGACATGACCGACGAGATCACCAAGGGCCTGCCCGCGATGATCAACGGCAAGCCG
GTGCTGGGGGCCATCGACATGGCCGCCGTCACGCGCATCGGCTGGACGCTCGTGGCGCTGTATGTGGCGTACGCGCTGTG
CTCGTACGTGCAGAGCTGGATGATGGCGACCGTCACGCAGCGCACGGCGCAACGCCTGCGCTCGGCGATCGACGTGAAGA
TGAACAAACTGCCGCTCAAATACTTCGACGAGCACAGCAACGGCGACGTGATGAGCCGCATCACGAACGACGTGGACGCC
GTGGGGCAGACGCTCGGGCAGTCGCTCGGCTCACTGATCACCTCGGTCACGCTGTTCTTCGGCGCACTGATCATGATGTT
CGCGAACAACTGGCTGCTCGCGTTGTGCGCGATCGCGGCGAGCCTGCTGGGCATGGTGCTCATGCTCGTCGTCATGCGGT
TCTCGCAGCGGTACTTCGTCAAGCAGCAGGCGGCACTCGGCGACGTCAACGGCCACGTCGAGGAGATGTACAGCGGGCAC
ACGGTCGTCAAGGCGTTCGGCGGCGAGGCGGACGCGATCCGCCGGTTCGAGCGCTACAACAACGACCTGTACGAGTCGGG
GTGGAAGAGCCAGTTCCTTTCCGGCCTGATGATGCCGATGATGAACCTCGTGGGCAATCTCGGGTATGTCGTCGTGTGTG
TCGTCGGCGCGTGGCTCGCGATGAGCGGGCGCATCGAATTCGGTGTCATCGTGGCGTTCATGCTGTACATCCGCTTCTTC
ACGCAGCCGCTTTCGCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGTGCGGCCGGCGCCGAGCGCGTGTTCACGTT
CCTCAACGAACCGGAGCTCGCCGACGAATCGTCCAAGCAGCCGCTGCTCGGCATGGGTGATGACGGCGAGATCACGCCGG
TCGAGGGGCGCGTGAGTTTCGAGCACGTCAGGTTCGGGTACGACGCCGACCGCATGATCATCCATGATTTCTCCGCGGAC
GTGCAGCCGGGGCAGAAGGTCGCGATCGTCGGGCCGACGGGCGCGGGCAAGACGACGATGGTCAACCTGCTCATGCGGTT
CTATGAAATCAACGGCGGCAAGATCTCGATTGACGGCATCGACACGAAGGACGTGCCGCGCTGGAACGTGCATGACCAGT
TCTCGATGGTGCTGCAGGACACCTGGGTGTTCCAAGGCACCGTGCGCGAGAACATCGTCTATGCGAAGGAAGGCGTGAGC
GACGAGCAGGTCATCGCGGCGTGCAAGGCCGTGGGATTGCACCGCTACATCATGTCGCTGCCCAACGGGTATGACACCGT
GCTCGACGAGTCGGCCACGCTGTCGCAAGGCCAGAAACAGCTGCTGACGATCGCGCGCGCGATGGTGCAGGATTCGCCGA
TCCTGATCCTCGACGAGGCGACGAGTTCGGTCGACACGCGCACCGAGGAACTGATCCAGACGGCGATGGACAGGCTCACC
GAAGGGCGCACGAGTTTCGTCATCGCGCACCGCCTCTCCACGATCCGCGACGCCGACATGATCCTCGTCATGAGGGACGG
CGACATCGTGGAACGCGGCACACACGACGAGCTGCTCGCGCGCGGCGGTTTCTACGCCGACATCTACAACGCGCAGTTCT
CCTTGGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(395-542)

ABC transporter transmembrane region (ABC_membrane)

(40-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.195

92.869

0.522