Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   NUU05_RS02695 Genome accession   NZ_CP102538
Coordinates   493154..493897 (+) Length   247 a.a.
NCBI ID   WP_011681551.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TH-4     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 488154..498897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NUU05_RS02675 (NUU05_02665) dinB 489096..490199 (+) 1104 WP_011681554.1 DNA polymerase IV -
  NUU05_RS02680 (NUU05_02670) - 490497..490730 (+) 234 WP_002947030.1 hypothetical protein -
  NUU05_RS02685 (NUU05_02675) - 491190..492020 (+) 831 WP_011681553.1 transporter substrate-binding domain-containing protein -
  NUU05_RS02690 (NUU05_02680) - 492408..493154 (+) 747 WP_100284797.1 amino acid ABC transporter permease -
  NUU05_RS02695 (NUU05_02685) amiE 493154..493897 (+) 744 WP_011681551.1 amino acid ABC transporter ATP-binding protein Regulator
  NUU05_RS02700 (NUU05_02690) - 494112..494336 (+) 225 WP_002951743.1 DUF4059 family protein -
  NUU05_RS02705 (NUU05_02695) trxB 494369..495322 (+) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  NUU05_RS02710 (NUU05_02700) rsmD 495413..496012 (+) 600 Protein_472 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  NUU05_RS02715 (NUU05_02705) coaD 496046..496543 (+) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  NUU05_RS02720 (NUU05_02710) sepM 496521..497597 (+) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  NUU05_RS02725 (NUU05_02715) - 497682..498626 (+) 945 WP_011226463.1 TIGR01212 family radical SAM protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7813

>NTDB_id=617100 NUU05_RS02695 WP_011681551.1 493154..493897(+) (amiE) [Streptococcus thermophilus strain TH-4]
MISIKNVTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDEEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=617100 NUU05_RS02695 WP_011681551.1 493154..493897(+) (amiE) [Streptococcus thermophilus strain TH-4]
ATGATTAGTATCAAAAATGTGACCAAGGAATTTTCAGGACAAAAGGTTCTAGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCTATGGTTTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTTAAGAT
TGTTAAGAAACTTTCTGACGAAGAAGCTACCAAGATTGCGAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364