Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LJA38_RS08040 Genome accession   NZ_CP085283
Coordinates   1621435..1622214 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain TPS3N     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616435..1627214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA38_RS08020 trmFO 1617122..1618429 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  LJA38_RS08025 xerC 1618499..1619416 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  LJA38_RS08030 hslV 1619432..1619977 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LJA38_RS08035 hslU 1619985..1621397 (+) 1413 WP_254900101.1 HslU--HslV peptidase ATPase subunit -
  LJA38_RS08040 codY 1621435..1622214 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LJA38_RS08045 flgB 1622568..1622957 (+) 390 WP_063174820.1 flagellar basal body rod protein FlgB -
  LJA38_RS08050 flgC 1622957..1623409 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  LJA38_RS08055 fliE 1623420..1623740 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LJA38_RS08060 fliF 1623783..1625393 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  LJA38_RS08065 fliG 1625406..1626422 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LJA38_RS08070 fliH 1626415..1627170 (+) 756 WP_057080704.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=616967 LJA38_RS08040 WP_003154263.1 1621435..1622214(+) (codY) [Bacillus velezensis strain TPS3N]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=616967 LJA38_RS08040 WP_003154263.1 1621435..1622214(+) (codY) [Bacillus velezensis strain TPS3N]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCAGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471