Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   JIX56_RS35550 Genome accession   NZ_CP102512
Coordinates   8145610..8147697 (-) Length   695 a.a.
NCBI ID   WP_257546700.1    Uniprot ID   -
Organism   Streptomyces sp. CA-210063     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8140610..8152697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JIX56_RS35530 (JIX56_35530) pgl 8140958..8141740 (-) 783 WP_257546693.1 6-phosphogluconolactonase -
  JIX56_RS35535 (JIX56_35535) opcA 8141737..8142930 (-) 1194 WP_257546695.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  JIX56_RS35540 (JIX56_35540) zwf 8142927..8144450 (-) 1524 WP_257546697.1 glucose-6-phosphate dehydrogenase -
  JIX56_RS35545 (JIX56_35545) tal 8144456..8145574 (-) 1119 WP_257546698.1 transaldolase -
  JIX56_RS35550 (JIX56_35550) recP/tkt 8145610..8147697 (-) 2088 WP_257546700.1 transketolase Machinery gene
  JIX56_RS35555 (JIX56_35555) - 8148071..8149027 (+) 957 WP_257546702.1 heme o synthase -
  JIX56_RS35560 (JIX56_35560) - 8149190..8149552 (+) 363 WP_257546704.1 hypothetical protein -
  JIX56_RS35565 (JIX56_35565) - 8149610..8150716 (+) 1107 WP_257546705.1 amidohydrolase -
  JIX56_RS35570 (JIX56_35570) - 8150762..8151595 (+) 834 WP_257546707.1 nucleotidyltransferase -
  JIX56_RS35575 (JIX56_35575) - 8151609..8152622 (-) 1014 WP_257546709.1 COX15/CtaA family protein -

Sequence

Protein


Download         Length: 695 a.a.        Molecular weight: 74757.41 Da        Isoelectric Point: 4.8927

>NTDB_id=616861 JIX56_RS35550 WP_257546700.1 8145610..8147697(-) (recP/tkt) [Streptomyces sp. CA-210063]
MSTKPTTTDLAWTALDQRAVDTARVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADPDWVGRDRFVLSAGHSS
LTLYIQLYLGGFGLELADLESFRTWGSKTPGHPEYGHTKGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAEGESPF
DHHIFVIAGDGCLQEGISAEASSLAGHQKLGNLVMLWDDNHISIEGDTETAVSEDTAKRYEAYGWHVQRVEPKENGDLDP
AALYAAVQKAKAVTDKPSFIAMRSIIAWPAPNAQNTEAAHGSALGADEVAATKRVLGFDPEKDFEVADEVIEHTRALGER
GREARAAWEKQLQEWRDGNAERAAEFDRISAGELPEGWESHLPEFETGKGVATRAASGKVLQALGAVIPELWGGSADLAG
SNNTTIDKTSSFLPADNPLPEANPYGRTIHFGIREHAMAAEMNGIALHGNTRVFGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLNVVRPADANETAIAWREILKRYTKEFGKGAPHGLALTRQGVPTYEADE
DAAKGGYVLFDAEDGDAQVILIATGSEVHVAVEARERLQAQGVPTRVVSMPSVEWFEEQDQGYRDSVLPPSVKARVAVEA
GIGLTWHRYVGDAGRIVSLEHFGASADGKVLFHEFGFTAENVAAAAQESLAAAQR

Nucleotide


Download         Length: 2088 bp        

>NTDB_id=616861 JIX56_RS35550 WP_257546700.1 8145610..8147697(-) (recP/tkt) [Streptomyces sp. CA-210063]
GTGAGCACCAAGCCGACCACTACAGACCTCGCGTGGACCGCACTGGACCAGCGGGCCGTCGACACCGCCCGAGTCCTGGC
CGCCGACGCCGTACAGAAGGTCGGCAACGGCCATCCCGGTACGGCGATGAGCCTCGCGCCCGCCGCGTACACCCTCTTTC
AGAAGGTGATGCGCCACGACCCCGCCGACCCCGACTGGGTGGGCCGTGACCGGTTCGTCCTGTCCGCGGGCCACTCCTCC
TTGACCCTCTACATCCAGCTGTACCTGGGCGGCTTCGGCCTGGAGCTGGCGGACCTGGAGTCCTTCCGCACCTGGGGTTC
GAAGACCCCGGGCCACCCCGAGTACGGACACACCAAGGGCGTCGAGACGACGACCGGGCCGCTGGGCCAGGGTGTCGCCA
ACGCCGTGGGCATGGCGATGGCCGCCCGCTACGAGCGTGGTCTGTTCGACCCGGAGGCCGCCGAGGGCGAGTCGCCGTTC
GACCACCACATCTTCGTGATCGCCGGTGACGGCTGCCTCCAGGAGGGCATCTCCGCCGAGGCGTCCTCGCTGGCCGGTCA
CCAGAAGCTCGGCAACCTCGTGATGCTGTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACGGCCGTCTCCG
AGGACACCGCCAAGCGGTACGAGGCGTACGGCTGGCACGTGCAGCGCGTCGAGCCCAAGGAGAACGGCGACCTCGACCCG
GCCGCGCTGTACGCGGCGGTCCAGAAGGCGAAGGCGGTCACCGACAAGCCGTCGTTCATCGCGATGCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGCGCGGACGAGGTCGCGGCCACCAAGC
GGGTCCTCGGCTTCGACCCGGAGAAGGACTTCGAGGTCGCGGACGAGGTCATCGAGCACACGCGCGCCCTGGGCGAGCGT
GGCCGTGAGGCCCGTGCCGCCTGGGAGAAGCAGCTCCAGGAGTGGCGCGACGGCAACGCCGAGCGTGCCGCCGAGTTCGA
CCGCATCAGCGCGGGCGAGCTGCCCGAGGGCTGGGAGTCGCACCTGCCGGAGTTCGAGACGGGCAAGGGTGTCGCCACCC
GTGCCGCGTCCGGCAAGGTGCTCCAGGCGCTCGGCGCGGTCATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCGGGC
TCGAACAACACGACGATCGACAAGACGTCGTCCTTCCTGCCGGCGGACAACCCGCTGCCGGAGGCGAACCCGTACGGCCG
CACGATCCACTTCGGCATCCGTGAGCACGCCATGGCCGCGGAGATGAACGGCATCGCGCTGCACGGCAACACCCGTGTCT
TCGGCGGCACGTTCCTTGTGTTCTCCGACTACATGCGCAACGCCGTCCGTCTCTCCGCGCTGATGCACCTGCCGGTGACG
TACGTGTGGACGCACGACTCCATCGGTCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCACCTGGCCGCGCTGCG
CGCGATCCCGGGCCTGAACGTGGTCCGCCCGGCCGACGCCAACGAGACGGCGATCGCCTGGCGCGAGATCCTCAAGCGCT
ACACCAAGGAGTTCGGCAAGGGCGCCCCGCACGGCCTCGCGCTGACCCGCCAGGGCGTGCCGACGTACGAGGCCGACGAG
GATGCCGCCAAGGGTGGTTATGTCCTCTTCGACGCCGAGGATGGTGACGCCCAGGTGATCCTGATCGCCACCGGCTCCGA
GGTGCACGTGGCCGTGGAGGCGCGGGAGCGGCTCCAGGCGCAGGGCGTGCCCACCCGGGTGGTGTCCATGCCGTCCGTGG
AGTGGTTCGAGGAGCAGGACCAGGGGTACCGGGACAGCGTTCTGCCGCCGTCCGTCAAGGCGCGTGTCGCGGTCGAGGCC
GGGATCGGTCTGACCTGGCACCGGTATGTCGGTGACGCCGGTCGCATCGTTTCGCTGGAGCACTTCGGCGCTTCGGCCGA
CGGCAAGGTCCTTTTCCACGAGTTCGGCTTCACTGCCGAGAACGTGGCCGCTGCCGCACAGGAATCCCTCGCAGCGGCTC
AGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(576-682)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.133

97.554

0.44