Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LJA36_RS01295 Genome accession   NZ_CP085282
Coordinates   376080..376859 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 371080..381859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS01265 fliH 371124..371879 (-) 756 WP_015417466.1 flagellar assembly protein FliH -
  LJA36_RS01270 fliG 371872..372888 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  LJA36_RS01275 fliF 372901..374511 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  LJA36_RS01280 fliE 374554..374874 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  LJA36_RS01285 flgC 374885..375337 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  LJA36_RS01290 flgB 375337..375726 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  LJA36_RS01295 codY 376080..376859 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LJA36_RS01300 hslU 376897..378309 (-) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  LJA36_RS01305 hslV 378317..378862 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  LJA36_RS01310 xerC 378878..379795 (-) 918 WP_039251511.1 tyrosine recombinase XerC -
  LJA36_RS01315 trmFO 379865..381172 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=616861 LJA36_RS01295 WP_003154263.1 376080..376859(-) (codY) [Bacillus amyloliquefaciens strain TPS17]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=616861 LJA36_RS01295 WP_003154263.1 376080..376859(-) (codY) [Bacillus amyloliquefaciens strain TPS17]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471