Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG333_RS15930 Genome accession   NZ_CP085270
Coordinates   3066375..3068720 (-) Length   781 a.a.
NCBI ID   WP_223490354.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3061375..3073720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG333_RS15915 (LG333_15840) dtd 3062812..3063252 (-) 441 WP_223490352.1 D-aminoacyl-tRNA deacylase -
  LG333_RS15920 (LG333_15845) - 3063269..3065467 (-) 2199 WP_223490353.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  LG333_RS15925 (LG333_15850) - 3065848..3066360 (-) 513 WP_010195994.1 adenine phosphoribosyltransferase -
  LG333_RS15930 (LG333_15855) recJ 3066375..3068720 (-) 2346 WP_223490354.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG333_RS15935 (LG333_15860) - 3068897..3069220 (-) 324 WP_223490355.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG333_RS15940 (LG333_15865) - 3069238..3070128 (-) 891 WP_223490356.1 cation diffusion facilitator family transporter -
  LG333_RS15945 (LG333_15870) secDF 3070246..3072495 (-) 2250 WP_223490358.1 protein translocase subunit SecDF -
  LG333_RS15950 (LG333_15875) - 3072673..3072954 (-) 282 WP_169292471.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87994.11 Da        Isoelectric Point: 4.8446

>NTDB_id=616772 LG333_RS15930 WP_223490354.1 3066375..3068720(-) (recJ) [Sutcliffiella horikoshii strain ABH-536]
MLASKSRWNVNESSMEQVEQLAQSLDIAPLIASLLVNRGFDTIDAAKEFLYTNDQEFHDPFLMEDMDKLVERVNQAIAKE
EKILVFGDYDADGVSSTTVMVTALREIGALVDFYIPNRFTEGYGPNENAFKQAKENGYSVIITVDTGISAINEAKVAKEL
GLDLIITDHHEPGPELPDAFAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPEHLLDVAAIGTIADLVPLVGENRLL
ASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGRLDNADPAVHLLMTNDPEEAKMLAEEMESYNKE
RQQIVTQITEEAIQQVEEKYPPEDNGFIIVEGNNWNAGVIGIVASRLVDRFYRPTIVLSLDEDKGLAKGSARSIAGFDLF
ENLSECRDILPHFGGHPMAAGMTLKIEDVNELRQRMNQKALEILTDEDFTPITDVDIECKVEEVTLATIEQLEMLAPFGV
SNPKPKVLVKGVLPQQIRQIGNKSNHLKLVIEQDGSSLDCVGFGFGETYHHVSPGASLDVLGELSINEWNNFRKPQLFLK
DIRVTDWQLFDIRSIKQLNQTLNGIDKTKLHILYFNESTLEEINLHADLRPYANMVTNDTKEDLTGKYVVILDIPSEEAL
LSNLLENSTPERIYASFYQKENHFFSTIPTREHFKWFYALLAKKGSFDLRKHAEDIAKHRGWSKETVDFISQVFFDLEFV
TIDKGFIALNHAAKKRDFEESPTYRKKQQQVMLENLFLYSSYKQLKVWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=616772 LG333_RS15930 WP_223490354.1 3066375..3068720(-) (recJ) [Sutcliffiella horikoshii strain ABH-536]
TTGTTAGCTTCTAAATCAAGATGGAATGTAAATGAATCGAGTATGGAACAGGTTGAGCAATTAGCGCAGTCTTTAGATAT
TGCCCCTCTTATTGCTTCCCTTTTGGTAAACAGAGGGTTTGACACGATAGATGCAGCAAAAGAATTTTTATATACAAATG
ATCAAGAGTTTCATGATCCTTTTTTAATGGAGGATATGGACAAGCTCGTGGAGAGAGTAAATCAAGCGATTGCAAAGGAA
GAGAAGATCCTTGTGTTTGGCGACTATGATGCAGATGGAGTCAGCAGTACCACCGTTATGGTGACTGCGTTACGAGAAAT
CGGTGCACTGGTTGATTTTTATATCCCAAACCGTTTTACAGAGGGCTATGGGCCAAATGAAAATGCCTTCAAACAAGCAA
AAGAAAATGGATATTCTGTTATTATCACAGTCGACACAGGAATCTCTGCCATCAATGAAGCAAAAGTGGCAAAAGAACTA
GGGTTGGACCTTATCATCACCGATCACCATGAGCCTGGACCAGAATTGCCTGATGCTTTTGCGATCATTCACCCGAAAAA
AGAAACTTGCTCTTACCCGTTTGATGACCTTGCTGGTGTTGGTGTTGCCTACAAGGTCGCACATGCACTCCTCGGAAAAA
ATCCGGAGCACCTCCTTGATGTGGCAGCCATCGGAACCATTGCCGATTTGGTCCCGTTAGTCGGGGAGAACAGACTGCTT
GCCTCTAAAGGAATCAAAAAGATGCAACAGACCACACGTGTCGGTTTAAAGGCGCTTCTTCAAAAATGCGGAGTGGAATT
GCATACGGTAACAGAAGAGACAGTAGGGTTTTCGATCGGACCGAGAATCAATGCGGTAGGGCGACTGGACAATGCAGACC
CGGCAGTTCATCTTCTTATGACAAATGATCCTGAAGAAGCCAAAATGCTTGCAGAGGAAATGGAAAGTTACAACAAAGAG
AGACAGCAAATTGTGACCCAGATTACCGAAGAAGCCATTCAACAGGTGGAAGAGAAATACCCGCCAGAGGATAATGGTTT
TATTATTGTGGAGGGAAATAATTGGAATGCAGGAGTGATCGGGATTGTGGCATCACGCCTTGTGGACCGTTTTTACCGAC
CAACCATCGTGCTTAGCCTTGATGAGGATAAAGGGTTGGCAAAAGGTTCTGCGCGTTCCATTGCCGGATTTGATCTCTTT
GAAAACCTTTCGGAATGCCGGGATATTTTGCCTCATTTCGGTGGACATCCAATGGCGGCCGGAATGACGTTGAAAATAGA
AGATGTAAATGAGCTCAGACAAAGAATGAATCAAAAGGCGTTAGAAATTCTGACAGATGAAGATTTCACTCCTATTACGG
ACGTTGATATTGAATGCAAAGTGGAAGAGGTAACACTTGCAACAATAGAGCAGTTGGAAATGCTTGCTCCATTCGGAGTG
TCCAATCCAAAACCAAAAGTGCTGGTAAAAGGTGTCTTGCCACAACAAATTCGCCAAATCGGAAACAAAAGCAATCATTT
GAAACTGGTCATTGAACAGGATGGCAGTTCACTAGATTGTGTAGGCTTTGGCTTTGGAGAAACGTATCATCACGTCTCCC
CTGGGGCATCTCTTGACGTTTTGGGAGAACTCTCTATCAATGAATGGAACAATTTCCGCAAGCCTCAACTTTTTTTGAAA
GATATCAGAGTGACAGATTGGCAGCTTTTTGATATCCGTTCCATTAAACAGTTAAATCAAACGCTAAATGGAATAGATAA
AACAAAACTCCACATCCTATATTTTAATGAATCTACTTTGGAAGAAATTAATCTGCATGCTGATTTACGACCATATGCAA
ATATGGTAACAAATGATACTAAAGAAGATTTGACAGGAAAGTATGTTGTCATACTGGATATCCCTTCTGAAGAAGCGCTC
CTATCAAATTTATTAGAAAATAGTACGCCTGAGCGAATCTATGCGTCCTTTTATCAAAAGGAGAACCATTTCTTTTCTAC
CATCCCGACGAGAGAGCACTTTAAATGGTTTTACGCATTACTTGCTAAAAAAGGTTCCTTTGACCTCAGAAAGCATGCAG
AAGATATCGCCAAACACCGAGGCTGGTCAAAAGAAACAGTGGATTTCATATCACAGGTGTTTTTTGACTTAGAATTTGTT
ACAATAGACAAGGGTTTTATCGCATTAAACCATGCAGCGAAAAAAAGGGACTTTGAAGAGTCTCCAACTTATCGTAAAAA
GCAACAGCAAGTGATGCTTGAAAACTTGTTTTTATATTCTTCATATAAACAATTAAAAGTGTGGTTTGATCAGCATCTAA
CCAAGCAATGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

RecJ OB domain (RecJ_OB)

(455-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.172

99.744

0.54