Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LG273_RS11245 Genome accession   NZ_CP085256
Coordinates   2134147..2136456 (-) Length   769 a.a.
NCBI ID   WP_404453617.1    Uniprot ID   -
Organism   Oceanobacillus kapialis strain ABH-508     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2129147..2141456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG273_RS11225 (LG273_11190) - 2129306..2129575 (-) 270 WP_344379904.1 IreB family regulatory phosphoprotein -
  LG273_RS11230 (LG273_11195) alaS 2129749..2132388 (-) 2640 WP_404453607.1 alanine--tRNA ligase -
  LG273_RS11235 (LG273_11200) - 2132795..2133850 (-) 1056 WP_404453610.1 AI-2E family transporter -
  LG273_RS11240 (LG273_11205) - 2133892..2134080 (-) 189 WP_404453613.1 hypothetical protein -
  LG273_RS11245 (LG273_11210) recD2 2134147..2136456 (-) 2310 WP_404453617.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LG273_RS11250 (LG273_11215) - 2136476..2137138 (-) 663 WP_379564645.1 tetratricopeptide repeat protein -
  LG273_RS11255 (LG273_11220) mnmA 2137154..2138266 (-) 1113 WP_379564647.1 tRNA 2-thiouridine(34) synthase MnmA -
  LG273_RS11260 (LG273_11225) - 2138282..2139424 (-) 1143 WP_404459527.1 cysteine desulfurase family protein -
  LG273_RS11265 (LG273_11230) cymR 2139582..2140001 (-) 420 WP_404453620.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 769 a.a.        Molecular weight: 87238.28 Da        Isoelectric Point: 4.8605

>NTDB_id=616624 LG273_RS11245 WP_404453617.1 2134147..2136456(-) (recD2) [Oceanobacillus kapialis strain ABH-508]
METGRHSGEGDIGYIKGELLYTIFHNETEHFSIAKIKVLETNEEFQEKDIVAKGYFSNLQENTPYFFYGEFEKHVKFGLQ
YNVRSYKTFIPETKDGLIAYLSSDMFYGIGEKTAERIVEKLGENAITKILNNPEVLEKVPGIKKEKAEYLARTLQENQGF
EHVVVHLSTYNIGLKMAQKIYQVYKEEAVDILEADPYRYVFDIEGFGFQTADEIARRNGLAPNHPNRIGAGCIYILQKSV
QEGNVYMPVDECSGRVLDLLATADLSPDSIHNRLTELNKEKKVILQDGNAYLPSLYYAEDGFAAQVKRIMSEELDHQTPT
AELMKIIGEIEEEEVLSYGKEQFEAINQAIHSKMMILTGGPGTGKTTVLKGILNTYATIHSLSLDKQDYDNRSDYPFILT
APTGRAAKRLTESTGLPAVTIHRLLGWDGGSGFEKNESEQLDGRFLIIDEFSMVDIWMANNLFKAIPKDMQVLIVGDEDQ
LPSVGPGQVLSDLLSSGYIPFVRLTEVYRQKEGSKIIQLAHEIKNDKETSLENDKDFSYISCYEPQLLDVILKIFSKAMK
KGIEVRDIQVLAPMYRSTAGITMINKELQKLINPKSPQKREVRTQDAVFRVGDKVIQLVNQPEDGVYNGDIGEVVAIFTE
DENTDNVEQLVIVFDEKEVVYERKDYTNIMHAYCISIHKSQGSEFPIVILPVVSAYNRMLRKNLLYTAITRSKKSLIICG
EQRAFKRGIETIDTNKRYSALKEQLQARLENPVDVSPEEVEDISPYDFM

Nucleotide


Download         Length: 2310 bp        

>NTDB_id=616624 LG273_RS11245 WP_404453617.1 2134147..2136456(-) (recD2) [Oceanobacillus kapialis strain ABH-508]
ATGGAAACTGGCAGGCATTCCGGAGAGGGAGATATCGGCTATATTAAAGGAGAACTACTATACACCATTTTTCATAATGA
AACCGAGCACTTTTCCATAGCAAAAATTAAAGTATTGGAAACGAATGAAGAATTCCAAGAAAAAGACATTGTAGCAAAGG
GATACTTTTCCAACTTACAGGAAAATACCCCTTACTTTTTTTATGGAGAATTCGAAAAGCATGTCAAGTTTGGACTTCAA
TATAATGTTCGATCCTACAAAACATTTATTCCTGAAACAAAAGATGGGTTAATAGCTTACCTTTCCAGTGACATGTTTTA
CGGTATTGGTGAGAAAACAGCAGAAAGAATAGTAGAGAAGCTTGGTGAAAATGCTATTACCAAAATACTTAACAACCCCG
AGGTGTTAGAAAAGGTGCCAGGTATTAAAAAGGAAAAAGCGGAATACCTGGCACGAACGCTTCAGGAGAACCAAGGGTTT
GAACATGTTGTGGTCCATCTGTCTACCTATAATATTGGTCTTAAAATGGCACAAAAAATATACCAAGTTTATAAGGAAGA
AGCTGTTGATATATTAGAAGCGGACCCTTATCGGTATGTATTTGATATTGAAGGCTTTGGTTTTCAGACAGCTGATGAAA
TTGCTAGAAGAAATGGACTTGCTCCCAACCATCCAAATCGGATTGGCGCAGGGTGTATATATATTCTGCAAAAAAGTGTG
CAGGAAGGAAATGTATATATGCCTGTCGATGAATGTTCAGGACGAGTACTTGATTTACTAGCAACTGCTGATCTATCACC
AGATTCGATTCATAACAGATTAACGGAGTTAAATAAAGAGAAAAAGGTTATCTTGCAGGATGGTAATGCCTATCTACCCT
CGCTTTATTATGCAGAAGATGGTTTCGCCGCTCAAGTGAAGAGGATAATGAGTGAAGAGCTTGATCATCAAACCCCTACA
GCTGAATTAATGAAAATCATCGGTGAGATAGAAGAAGAGGAAGTTTTAAGCTATGGGAAAGAGCAATTTGAAGCGATCAA
TCAGGCAATCCACTCAAAAATGATGATTTTGACTGGCGGACCTGGTACAGGGAAAACCACCGTATTAAAAGGGATATTAA
ATACCTATGCGACAATTCACAGCCTTTCTTTAGATAAACAAGATTATGATAATCGTTCTGATTACCCGTTTATCCTAACT
GCACCGACTGGGCGAGCTGCAAAGCGACTAACAGAATCAACTGGACTTCCTGCCGTTACCATCCATCGTCTACTTGGTTG
GGACGGAGGTAGTGGATTTGAAAAGAATGAGAGTGAACAGCTTGATGGAAGGTTTCTGATAATCGATGAATTTTCCATGG
TAGACATTTGGATGGCGAATAATTTATTTAAGGCAATTCCTAAAGATATGCAGGTACTAATTGTAGGGGACGAGGATCAG
CTTCCTTCTGTAGGCCCGGGACAGGTGTTATCGGATTTACTTAGCAGTGGATATATTCCTTTCGTACGTCTAACCGAAGT
ATACCGACAGAAAGAAGGATCAAAGATTATACAGCTTGCGCATGAAATAAAGAATGACAAGGAAACTAGCTTAGAAAACG
ATAAAGATTTCAGCTATATTTCCTGCTATGAACCACAACTGTTAGATGTCATTTTAAAGATTTTCTCCAAGGCAATGAAG
AAGGGGATTGAGGTACGGGATATCCAGGTCCTTGCCCCAATGTATCGATCAACGGCAGGAATCACGATGATCAATAAAGA
ACTTCAAAAATTAATTAACCCAAAATCCCCACAGAAAAGAGAAGTGCGGACACAAGATGCTGTATTTCGGGTTGGTGATA
AAGTCATCCAGCTTGTAAATCAACCAGAAGATGGGGTTTATAATGGTGATATTGGCGAGGTAGTTGCCATTTTTACCGAA
GATGAAAACACGGATAATGTTGAACAGTTGGTAATTGTGTTCGATGAGAAAGAAGTGGTTTATGAAAGGAAGGATTATAC
AAATATTATGCATGCTTACTGTATTTCCATTCATAAATCACAGGGAAGTGAATTTCCGATAGTTATATTACCAGTTGTCT
CTGCGTATAACCGTATGCTTCGAAAAAACTTATTGTATACTGCGATAACCCGCAGCAAGAAGTCTCTTATTATTTGTGGG
GAGCAGAGAGCCTTTAAGCGCGGAATTGAAACAATAGATACGAATAAGCGTTATTCGGCCCTTAAAGAGCAGTTGCAAGC
ACGACTTGAGAACCCTGTGGATGTCAGTCCAGAAGAGGTAGAAGATATTTCTCCTTATGATTTTATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-246)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-719)

AAA domain (AAA_30)

(338-542)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-654)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

47.954

100

0.488