Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LG298_RS20595 Genome accession   NZ_CP085255
Coordinates   4057414..4059840 (-) Length   808 a.a.
NCBI ID   WP_048010340.1    Uniprot ID   -
Organism   Cytobacillus firmus strain ABH-509     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4052414..4064840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS20570 (LG298_20420) - 4054996..4056084 (-) 1089 WP_048010337.1 AI-2E family transporter -
  LG298_RS20575 (LG298_20425) - 4056207..4056341 (-) 135 WP_081757307.1 YrzQ family protein -
  LG298_RS20580 (LG298_20430) - 4056367..4056558 (-) 192 WP_048010338.1 hypothetical protein -
  LG298_RS20585 (LG298_20435) - 4056574..4057044 (-) 471 WP_048010339.1 PRC-barrel domain-containing protein -
  LG298_RS20590 (LG298_20440) - 4057166..4057315 (-) 150 WP_197087702.1 hypothetical protein -
  LG298_RS20595 (LG298_20445) recD2 4057414..4059840 (-) 2427 WP_048010340.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LG298_RS20600 (LG298_20450) - 4059866..4060531 (-) 666 WP_048010341.1 tetratricopeptide repeat protein -
  LG298_RS20605 (LG298_20455) mnmA 4060648..4061763 (-) 1116 WP_048010342.1 tRNA 2-thiouridine(34) synthase MnmA -
  LG298_RS20610 (LG298_20460) - 4061895..4063037 (-) 1143 WP_048010343.1 cysteine desulfurase family protein -
  LG298_RS20615 (LG298_20465) cymR 4063105..4063524 (-) 420 WP_009333072.1 cysteine metabolism transcriptional regulator CymR -
  LG298_RS20620 (LG298_20470) - 4063524..4064210 (-) 687 WP_048010344.1 YitT family protein -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 91353.41 Da        Isoelectric Point: 4.9135

>NTDB_id=616589 LG298_RS20595 WP_048010340.1 4057414..4059840(-) (recD2) [Cytobacillus firmus strain ABH-509]
MEKQDSMDLFAEQGKFIKGRHLVTIFHNEQNLYTVVRIRVDETNDSYDEKEAVITGYLPKMHEHETYIFYGEFKDHPKFG
IQFHASHYRKDLPQTKQGVANYLSSELFKGIGKKTAEQIVETLGEDAITRILNQPSLLDNVPKLSPEKAKLLYDTLMEHQ
GLEQAMIALNQYGFGPQLSMRIYQVYKEMTIEVVQNNPYKLVEDIEGVGFGRADELGYQIGISGNHPDRIKAACLYILET
ESMQAGHVYIEAKPLLQSVKKLLEENKRDLIEYKDISNELIKLEEEGKIMAEGQKIFLPSLYFSEKGLVTNIKRILKQTQ
YDEQFPESEFLLALGNLEERLGVQYAPTQKEAIQTALMSPMLILTGGPGTGKTTVIKGIVELYAELHGCSLELKDYKKEE
PFPFLLAAPTGRAAKRMAESTGLPAVTIHRLLGWNGSEGFDRHEESPLEGRILIVDETSMVDVWLANQLFKALPENMQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHEMKKGKLPENITAQQSDRSFIKCQPGQIADVV
EKVVLNAKKKGYSSKDIQVLAPMYRGPAGIDRLNEILQEILNPNPDGSRKELSFGDVKYRIGDKVLQLVNQPENNVFNGD
MGEIVSIFYAKENTEKQDMIVVSFDGAEATYTRQDLNQITHAYCCSVHKSQGSEFPIVIMPVVKSYYRMLRRNLLYTAIT
RSRQFLILCGEEDALKMGVERADEQARLTTLSEKLRDAILFNDETGLEDTAESSLTETLSLEEKLLQADPMIGMGNITPY
DFLEKEYS

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=616589 LG298_RS20595 WP_048010340.1 4057414..4059840(-) (recD2) [Cytobacillus firmus strain ABH-509]
ATGGAAAAACAAGATTCCATGGATCTTTTTGCCGAACAGGGGAAGTTCATAAAGGGCAGACATCTGGTCACAATCTTTCA
TAATGAGCAAAACTTATATACGGTTGTGCGCATTAGGGTTGATGAAACGAATGACTCTTATGATGAAAAAGAAGCGGTCA
TTACCGGCTATCTTCCAAAGATGCATGAGCATGAAACCTATATTTTTTATGGTGAATTCAAAGACCACCCTAAGTTCGGC
ATCCAATTCCATGCAAGCCATTACAGGAAAGATCTTCCCCAGACGAAACAAGGCGTAGCCAATTATTTATCAAGTGAATT
ATTTAAAGGGATTGGCAAGAAAACAGCCGAGCAAATCGTGGAGACACTTGGAGAAGATGCGATTACTCGTATTCTAAACC
AGCCGTCCCTCCTCGATAATGTTCCCAAGCTGTCACCTGAAAAAGCTAAATTGCTTTACGATACGCTGATGGAACACCAG
GGCCTTGAGCAAGCCATGATCGCTCTTAATCAATATGGGTTTGGACCGCAGCTTTCCATGAGAATTTATCAGGTGTATAA
AGAAATGACGATTGAAGTCGTTCAAAATAACCCTTATAAGCTGGTTGAGGATATAGAAGGGGTCGGCTTTGGCCGTGCTG
ATGAGCTGGGATATCAAATTGGCATATCAGGCAATCATCCTGACCGTATTAAAGCTGCCTGCCTCTACATACTGGAAACG
GAGAGTATGCAGGCAGGCCATGTTTATATTGAAGCAAAGCCTCTTCTGCAAAGTGTGAAGAAGCTGCTGGAAGAAAATAA
ACGTGATTTGATTGAATACAAGGATATATCCAATGAACTGATTAAGCTTGAAGAGGAAGGGAAGATCATGGCTGAAGGCC
AGAAAATTTTCCTTCCATCTCTTTATTTTTCGGAAAAAGGACTAGTAACCAATATTAAGCGGATCCTCAAGCAAACCCAG
TATGACGAACAGTTTCCGGAATCGGAATTTCTTTTGGCCCTTGGAAATTTGGAGGAGCGCCTGGGTGTCCAATATGCCCC
AACTCAAAAGGAAGCCATTCAAACAGCTCTTATGTCTCCTATGCTGATATTGACCGGCGGGCCGGGGACAGGAAAAACAA
CCGTTATTAAGGGGATTGTTGAGTTATATGCCGAGCTGCATGGCTGCTCCCTGGAACTGAAAGATTATAAAAAGGAAGAG
CCCTTTCCCTTTCTGCTGGCAGCCCCTACAGGAAGGGCTGCAAAACGGATGGCAGAATCAACAGGGCTGCCAGCTGTAAC
GATTCACCGTCTTCTTGGATGGAATGGGTCTGAAGGATTTGACAGGCACGAGGAGAGTCCGCTGGAAGGCAGGATTTTAA
TAGTAGATGAAACATCAATGGTTGATGTTTGGCTTGCAAATCAGCTTTTCAAGGCTCTTCCTGAAAATATGCAAGTAATA
CTGGTTGGTGACGAAGACCAGCTGCCTTCAGTGGGTCCCGGCCAGGTTTTGAAGGATCTTTTGCGCTCAGAACGCATTCC
AACTGTCCGTTTAACAGATATATACAGGCAGGCTGAAGGGTCTTCAATTATTGAACTGGCACATGAAATGAAAAAAGGCA
AGCTTCCTGAGAACATCACTGCGCAGCAATCGGACCGTTCATTTATCAAATGCCAGCCGGGCCAAATTGCTGATGTTGTT
GAAAAGGTTGTCCTTAATGCCAAAAAGAAAGGTTATTCATCTAAAGATATTCAGGTGCTTGCCCCAATGTATCGCGGACC
TGCAGGCATCGACAGACTAAACGAAATACTGCAGGAAATACTGAATCCAAATCCCGATGGATCGAGGAAAGAGCTGTCCT
TTGGTGATGTGAAATACAGAATTGGCGATAAGGTCCTTCAACTTGTCAACCAGCCTGAGAACAATGTTTTTAACGGGGAT
ATGGGTGAAATTGTTTCTATTTTTTACGCAAAGGAAAATACGGAAAAACAGGATATGATTGTCGTATCCTTTGATGGTGC
GGAAGCTACATACACAAGGCAGGATTTGAACCAGATCACTCATGCCTACTGCTGCTCTGTCCATAAATCGCAGGGAAGTG
AATTTCCGATTGTCATAATGCCTGTTGTTAAAAGCTATTACAGGATGCTGAGAAGGAATCTCCTTTATACCGCCATTACC
CGCAGCAGACAATTTTTGATATTGTGCGGCGAAGAAGATGCATTAAAAATGGGTGTGGAACGTGCGGATGAACAGGCCCG
CTTGACCACTCTTTCTGAAAAGCTGAGAGATGCAATCCTGTTTAATGATGAAACAGGGCTTGAAGATACAGCTGAGTCTT
CTCTTACGGAAACACTTTCTCTCGAAGAAAAGCTTCTCCAAGCCGATCCAATGATAGGAATGGGAAATATAACACCGTAT
GATTTTTTGGAAAAAGAATATAGCTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

AAA domain (AAA_30)

(345-552)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.857

98.639

0.61