Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG330_RS11780 Genome accession   NZ_CP085252
Coordinates   2179592..2181943 (-) Length   783 a.a.
NCBI ID   WP_404404067.1    Uniprot ID   -
Organism   Jeotgalibacillus malaysiensis strain ABH-525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2174592..2186943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG330_RS11760 (LG330_11705) - 2174694..2176247 (+) 1554 WP_404404061.1 N-acetylmuramoyl-L-alanine amidase -
  LG330_RS11765 (LG330_11710) dtd 2176283..2176720 (-) 438 WP_404404063.1 D-aminoacyl-tRNA deacylase -
  LG330_RS11770 (LG330_11715) - 2176739..2178931 (-) 2193 WP_404404065.1 RelA/SpoT family protein -
  LG330_RS11775 (LG330_11720) - 2179089..2179601 (-) 513 WP_322421295.1 adenine phosphoribosyltransferase -
  LG330_RS11780 (LG330_11725) recJ 2179592..2181943 (-) 2352 WP_404404067.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG330_RS11785 (LG330_11730) - 2182030..2182380 (-) 351 WP_404404069.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG330_RS11790 (LG330_11735) secDF 2182573..2184843 (-) 2271 WP_404404071.1 protein translocase subunit SecDF -
  LG330_RS11795 (LG330_11740) - 2184998..2185312 (-) 315 WP_404404073.1 post-transcriptional regulator -
  LG330_RS11800 (LG330_11745) spoVB 2185412..2186911 (+) 1500 WP_404404075.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 783 a.a.        Molecular weight: 87677.05 Da        Isoelectric Point: 5.2169

>NTDB_id=616471 LG330_RS11780 WP_404404067.1 2179592..2181943(-) (recJ) [Jeotgalibacillus malaysiensis strain ABH-525]
MLTSKTRWNVRESSTAETEKLAAALDIPLFIAKLLVQRGMTTPEAAAEFLHIDKKEFHDPFLFDDMKKAVERIEQAVNEG
ESILIYGDYDADGVTSTSVMLSALKRLGATPDFYIPNRFTEGYGPNEGAFRYAAEQGYTLVITVDNGISGVHEAKVLKEL
GVDLIITDHHEAGPELPEAFAIIHPNIEGGSYPFRELAGVGVAFKLAHALLKEPPTELLDLAAIGTIADLVPLTGENRLL
VKKGLKQLRASERKGLHALLNKSSAKIHEANEETVGFAIGPRLNAVGRLSDADPAVELLMTEDAATAEALASEIDAMNKE
RQSIVAEIAKEAMEIAEAHYKDDRVLVISKEGWNPGVVGIVASKLVEKFYRPVIILCEDAEKGTAKGSARSIEGFNMFRE
LSQNRSILPHFGGHPMAAGMTLEIQHIDELRTNLNRQAEKMSDEDFIPVSNIDVKASISEIDLESISQLQMLSPFGMKNP
KPKVLIELTEIASIRKIGAGQNHLKLSVKHDDQSLDAIAFGMGEIADQISPIAKLDLIGELSINEWNNIKKPQLFVSDMR
VREWQLFDIRGIAQAARWAPTIPEDSVVVAYKQHTYDRFNPILPQNVRLIDSLEHAGDLNADHQTIVFLDLPDDAKLLEA
VLHENKPARIYAHFYLEDPQFFSSIPKREDFAWFFAFLKKRKTFHLHQHGKALASHKNWSIDTINFMTKVFFELDFVTIN
DGFISLNEEISKRDLSESPAYQAKTRLAKLEQDLLYSSFHDLKKWFEERCGWSRQPEEEKVWI

Nucleotide


Download         Length: 2352 bp        

>NTDB_id=616471 LG330_RS11780 WP_404404067.1 2179592..2181943(-) (recJ) [Jeotgalibacillus malaysiensis strain ABH-525]
ATGCTAACATCTAAAACTAGATGGAATGTTAGAGAAAGCAGCACAGCTGAGACTGAAAAGCTTGCAGCCGCTCTTGACAT
TCCGCTTTTTATTGCAAAATTACTGGTACAAAGAGGGATGACCACCCCTGAAGCAGCCGCTGAATTTTTACATATTGATA
AAAAAGAATTTCATGATCCATTCCTTTTTGATGATATGAAAAAAGCAGTAGAACGCATTGAGCAGGCTGTTAACGAGGGA
GAGTCCATTTTAATTTATGGCGACTACGATGCTGATGGTGTGACGAGTACTTCTGTTATGCTGAGTGCATTAAAGCGTCT
TGGCGCTACGCCTGATTTTTATATTCCTAATCGCTTTACAGAGGGCTATGGTCCGAACGAAGGCGCTTTTCGCTATGCAG
CAGAACAGGGTTATACTTTAGTCATTACAGTTGACAATGGGATCTCAGGCGTTCATGAAGCGAAGGTGTTAAAAGAATTG
GGTGTTGATCTGATTATCACAGACCACCATGAAGCAGGTCCCGAACTGCCTGAAGCATTTGCGATTATCCATCCAAACAT
TGAAGGCGGATCGTATCCTTTCAGAGAGCTTGCCGGGGTCGGTGTTGCTTTTAAGCTTGCCCATGCGCTCCTTAAAGAAC
CCCCGACAGAACTGCTGGATCTTGCAGCGATCGGCACTATCGCCGACCTTGTGCCGCTAACTGGTGAAAACCGTCTGCTC
GTAAAAAAGGGTTTAAAACAATTACGTGCTTCTGAACGGAAAGGTCTCCATGCACTTTTAAATAAGTCCAGTGCGAAAAT
CCATGAAGCAAATGAAGAGACAGTCGGCTTTGCGATTGGACCGCGTCTGAATGCAGTAGGCAGATTATCTGATGCAGATC
CCGCAGTTGAGCTCCTCATGACTGAAGATGCAGCAACAGCTGAAGCACTCGCAAGTGAAATTGATGCCATGAATAAAGAG
CGCCAGTCAATCGTAGCTGAGATCGCTAAAGAAGCGATGGAAATTGCTGAAGCACACTATAAGGATGATCGGGTACTGGT
TATCTCTAAAGAAGGGTGGAACCCGGGTGTTGTCGGCATCGTTGCTTCTAAGCTCGTGGAGAAATTCTATCGTCCTGTCA
TTATTCTTTGTGAGGATGCAGAAAAGGGAACGGCGAAAGGATCAGCAAGAAGTATTGAAGGTTTTAACATGTTCCGTGAG
CTGTCACAAAACCGGTCCATACTTCCTCACTTTGGCGGACACCCAATGGCAGCAGGTATGACGTTAGAGATACAGCATAT
TGACGAATTACGTACAAACCTTAATCGTCAGGCTGAAAAGATGAGTGATGAAGACTTCATACCCGTTTCAAACATTGATG
TTAAAGCTTCAATCTCTGAGATTGACCTTGAATCAATCAGCCAGCTTCAAATGCTGTCTCCGTTCGGCATGAAAAATCCG
AAGCCGAAAGTATTGATCGAGCTGACAGAGATTGCTTCAATCAGAAAAATCGGTGCAGGTCAGAATCATTTAAAACTGTC
AGTAAAGCATGATGATCAGTCTCTTGACGCCATTGCATTCGGCATGGGTGAAATTGCAGATCAGATCTCTCCGATTGCAA
AGCTTGATCTGATCGGGGAACTTTCAATCAATGAATGGAATAACATTAAAAAGCCTCAGCTGTTTGTCAGTGACATGAGA
GTGAGGGAGTGGCAGCTGTTTGATATACGCGGAATTGCCCAGGCTGCACGGTGGGCACCGACGATTCCTGAGGATTCAGT
TGTGGTCGCTTATAAACAGCATACTTATGACCGGTTCAACCCGATTCTTCCTCAGAATGTGAGGCTAATTGATTCACTTG
AACATGCCGGTGATTTAAATGCAGACCATCAGACGATTGTGTTTCTTGATCTCCCTGATGATGCGAAGCTGCTTGAAGCA
GTGCTTCATGAGAATAAACCTGCGAGAATTTACGCGCATTTTTATCTTGAAGATCCACAGTTCTTCAGCTCGATTCCCAA
GCGTGAAGACTTTGCGTGGTTCTTTGCATTCCTGAAAAAACGAAAAACCTTCCATCTGCATCAGCATGGAAAGGCGCTTG
CCTCCCACAAAAATTGGTCAATAGACACAATTAATTTTATGACGAAGGTGTTTTTTGAACTGGATTTTGTTACAATAAAC
GATGGATTCATTTCGCTTAATGAAGAAATCAGTAAACGTGATTTGTCAGAATCCCCTGCTTATCAGGCAAAAACAAGGCT
TGCAAAGTTAGAGCAGGATTTATTATATTCATCATTTCATGATTTGAAAAAATGGTTTGAAGAGCGCTGCGGATGGTCGC
GGCAACCTGAGGAGGAAAAGGTATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-436)

RecJ OB domain (RecJ_OB)

(452-558)

DHH family (DHH)

(83-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(565-766)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.926

98.212

0.52