Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   LG330_RS11700 Genome accession   NZ_CP085252
Coordinates   2160636..2163011 (-) Length   791 a.a.
NCBI ID   WP_404404039.1    Uniprot ID   -
Organism   Jeotgalibacillus malaysiensis strain ABH-525     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155636..2168011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG330_RS11680 (LG330_11625) - 2156631..2156912 (-) 282 WP_404404034.1 DUF1292 domain-containing protein -
  LG330_RS11685 (LG330_11630) ruvX 2156923..2157342 (-) 420 WP_404404036.1 Holliday junction resolvase RuvX -
  LG330_RS11690 (LG330_11635) - 2157345..2157611 (-) 267 WP_039810001.1 IreB family regulatory phosphoprotein -
  LG330_RS11695 (LG330_11640) alaS 2157684..2160317 (-) 2634 WP_404404038.1 alanine--tRNA ligase -
  LG330_RS11700 (LG330_11645) recD2 2160636..2163011 (-) 2376 WP_404404039.1 ATP-dependent RecD-like DNA helicase Machinery gene
  LG330_RS11705 (LG330_11650) - 2163024..2163692 (-) 669 WP_404404041.1 tetratricopeptide repeat protein -
  LG330_RS11710 (LG330_11655) mnmA 2163939..2165054 (-) 1116 WP_404404043.1 tRNA 2-thiouridine(34) synthase MnmA -
  LG330_RS11715 (LG330_11660) - 2165080..2166216 (-) 1137 WP_404404045.1 cysteine desulfurase family protein -
  LG330_RS11720 (LG330_11665) cymR 2166232..2166651 (-) 420 WP_404404047.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 88886.25 Da        Isoelectric Point: 4.7096

>NTDB_id=616470 LG330_RS11700 WP_404404039.1 2160636..2163011(-) (recD2) [Jeotgalibacillus malaysiensis strain ABH-525]
MRGQQTDLFTEEELYVKGTLIVSIFYNEDNMYSVVRIRVSDTNIANAEKEMVVTGHFPSMQEEDTYVFFGKVKEHPRFGP
QFITERFKKELPQTKQGIIHYLSSDLFNGIGRKTAEKIVDTLGENAISKIMENEAVLFEVPKLSEEKAHHIHEVLIEHQG
LERIMVLLNDWGFGPQLSMKIYQFYQEKTVEVIEENPYRLVNDIEGVGFGKADELGRHLGLSGNHPDRIKAACLYTITQL
SMQEGHVYADSKQLLIRVKELLEKHQPEKVDYSDISKSLVELHEEGKIVGENKKVYLPSLYYSEVGIASSVESLTSNTEV
HDQFPEAEFLLALGDLEERIGVTYAPSQKEAIQTALSSPIMILTGGPGTGKTTVIKGIVELYAELHGLSLDPDNYSKDEP
FPIVLAAPTGRAAKRMTESTGLKAMTIHRLLGFNGQEDMDEEDDDRMVAGRLLIIDEMSMVDTWLANKLLQAVPESMQVI
LVGDQDQLPSVGPGQVLQDLLDAKKVPAVELTDIYRQEEGSSIIELAHHMKKGEVPSTIRQPYPDRSFIPCRANQMDEVV
GKIVKNAMTKGYTAKDIQVLAPMYRGPAGIDKLNSLLQQLMNPNDDGSRKELKWGDIVYRIGDKVLQLVNQPESNVFNGD
MGEVISIFYAKENTEKQDMILVSFDGVEVTYTRQDLNQITHAFCCSIHKSQGSEFPIVVLPVVKSYSRMLRRNLLYTAIT
RSSKFLIMCGEEDAFRYGVERKDDLTRLTSLKERLAGEEVTVSENTDPFEGGADPMIGMEGVTPYDFLETS

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=616470 LG330_RS11700 WP_404404039.1 2160636..2163011(-) (recD2) [Jeotgalibacillus malaysiensis strain ABH-525]
ATGAGAGGTCAGCAAACGGATCTGTTTACTGAAGAAGAATTATATGTAAAAGGAACGCTGATCGTTTCTATTTTTTATAA
TGAAGATAACATGTATTCAGTAGTAAGGATCCGTGTGTCTGACACGAATATAGCGAATGCTGAGAAGGAAATGGTCGTCA
CAGGCCATTTTCCTTCCATGCAGGAAGAAGATACATATGTGTTTTTTGGGAAAGTGAAAGAGCACCCGCGCTTTGGCCCG
CAGTTTATTACAGAGCGTTTTAAAAAAGAATTGCCTCAGACGAAGCAGGGCATTATTCATTACCTGTCCAGTGATCTTTT
TAATGGGATCGGCAGAAAAACGGCAGAAAAAATTGTTGATACACTAGGAGAAAATGCGATCTCTAAAATTATGGAAAATG
AAGCTGTGCTATTTGAAGTGCCAAAACTTTCTGAAGAGAAGGCTCACCATATTCATGAAGTACTGATTGAACATCAGGGA
CTTGAGCGGATTATGGTGCTTTTAAATGACTGGGGATTCGGACCTCAGCTCTCTATGAAAATTTATCAGTTTTATCAGGA
AAAAACGGTTGAAGTCATAGAAGAAAACCCTTATCGGCTTGTGAATGATATTGAAGGGGTCGGTTTTGGTAAAGCGGATG
AACTGGGCAGGCACCTTGGTCTGTCAGGGAATCATCCCGACAGAATTAAAGCTGCATGCCTGTATACAATTACCCAGCTC
TCTATGCAGGAAGGACATGTGTATGCAGATTCAAAGCAGCTGTTAATCAGAGTAAAAGAGCTGCTTGAAAAGCATCAGCC
GGAAAAAGTGGATTATAGTGATATTTCAAAAAGCCTGGTTGAATTACATGAAGAAGGAAAAATCGTCGGTGAAAACAAAA
AAGTTTATTTACCTTCTCTCTACTATTCAGAGGTCGGTATAGCTTCAAGTGTTGAGAGCCTGACCTCGAATACAGAAGTG
CATGATCAGTTTCCCGAAGCAGAATTCCTGCTCGCACTCGGTGATCTTGAAGAGCGGATAGGCGTCACATATGCACCTTC
TCAAAAAGAAGCGATCCAGACAGCCCTGTCTTCACCCATCATGATTTTAACTGGCGGACCGGGTACAGGGAAGACAACCG
TCATTAAAGGTATCGTTGAGCTTTATGCAGAACTCCATGGGCTATCACTCGATCCTGATAATTATTCAAAGGATGAACCG
TTCCCAATCGTACTTGCAGCACCTACAGGAAGAGCAGCAAAAAGGATGACTGAATCGACCGGTTTAAAAGCGATGACGAT
CCACCGGCTGCTCGGATTTAACGGTCAGGAGGATATGGATGAAGAGGATGACGACAGAATGGTTGCAGGGCGTCTGTTAA
TCATTGATGAAATGTCGATGGTCGATACTTGGCTTGCGAATAAGCTGCTGCAGGCAGTGCCTGAGTCTATGCAGGTCATA
CTGGTGGGAGATCAGGATCAGCTGCCATCAGTCGGACCTGGTCAAGTGTTGCAGGATCTGCTTGATGCTAAAAAAGTGCC
TGCAGTGGAGCTGACTGATATTTACCGCCAGGAGGAAGGGTCATCAATTATTGAACTTGCCCATCATATGAAAAAAGGGG
AAGTGCCGTCAACGATCAGGCAGCCTTATCCTGACCGTTCATTTATCCCGTGCAGAGCCAATCAGATGGATGAAGTGGTC
GGGAAGATTGTAAAAAATGCAATGACAAAGGGCTACACCGCAAAGGACATTCAGGTGCTCGCTCCAATGTATAGAGGACC
TGCCGGAATTGACAAACTGAATTCACTCCTGCAGCAGCTGATGAACCCGAATGATGACGGGTCAAGAAAAGAGCTGAAGT
GGGGGGATATTGTCTACCGGATAGGGGATAAAGTCCTCCAGCTCGTCAACCAGCCGGAAAGTAACGTATTTAACGGAGAT
ATGGGTGAAGTGATATCCATATTTTACGCGAAAGAAAACACTGAAAAACAAGATATGATTCTTGTCTCATTTGACGGTGT
CGAGGTCACCTATACAAGACAGGATCTTAACCAGATCACCCATGCATTCTGTTGTTCGATTCACAAATCACAGGGGAGCG
AATTCCCGATTGTCGTACTGCCTGTTGTAAAAAGTTATTCAAGGATGCTCAGAAGAAACCTTCTTTATACAGCAATCACA
AGAAGCAGTAAGTTTTTAATTATGTGCGGTGAAGAGGATGCATTCAGATACGGTGTTGAAAGAAAAGATGACCTGACGCG
TCTGACCTCCCTGAAAGAAAGACTTGCTGGAGAAGAGGTAACAGTCTCAGAGAATACTGATCCTTTTGAAGGTGGAGCGG
ATCCAATGATTGGAATGGAAGGGGTCACGCCTTACGATTTTCTTGAAACATCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-551)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

60.351

100

0.608