Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   LG321_RS15485 Genome accession   NZ_CP085250
Coordinates   3004340..3006685 (-) Length   781 a.a.
NCBI ID   WP_404458764.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2999340..3011685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG321_RS15470 (LG321_15430) dtd 3000777..3001217 (-) 441 WP_404347038.1 D-aminoacyl-tRNA deacylase -
  LG321_RS15475 (LG321_15435) - 3001234..3003432 (-) 2199 WP_404458763.1 RelA/SpoT family protein -
  LG321_RS15480 (LG321_15440) - 3003813..3004325 (-) 513 WP_010195994.1 adenine phosphoribosyltransferase -
  LG321_RS15485 (LG321_15445) recJ 3004340..3006685 (-) 2346 WP_404458764.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  LG321_RS15490 (LG321_15450) - 3006829..3006987 (-) 159 WP_404347042.1 hypothetical protein -
  LG321_RS15495 (LG321_15455) - 3007285..3007608 (-) 324 WP_404458765.1 lipopolysaccharide assembly LapA domain-containing protein -
  LG321_RS15500 (LG321_15460) - 3007626..3008516 (-) 891 WP_223490356.1 cation diffusion facilitator family transporter -
  LG321_RS15505 (LG321_15465) secDF 3008634..3010883 (-) 2250 WP_404458767.1 protein translocase subunit SecDF -
  LG321_RS15510 (LG321_15470) - 3011060..3011341 (-) 282 WP_169292471.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 781 a.a.        Molecular weight: 87874.98 Da        Isoelectric Point: 4.8397

>NTDB_id=616417 LG321_RS15485 WP_404458764.1 3004340..3006685(-) (recJ) [Sutcliffiella horikoshii strain ABH-541]
MLASKSRWNVNVSSIEQVEQLAQSLDIAPLIASLLVNRGFDTIDAAKEFLYTNDQEFHDPFLMEDMDKLVERVNQAIAKE
EKILVFGDYDADGVSSTTVMVTALREIGALVDFYIPNRFTEGYGPNENAFKQAKENGYSVIITVDTGISAINEAKVAKEL
GVDLIITDHHEPGPELPDAFAIIHPKKETCSYPFDDLAGVGVAYKVAHALLGKNPEHLLDVAAIGTIADLVPLVGENRLL
ASKGIKKMQQTTRVGLKALLQKCGVELHTVTEETVGFSIGPRINAVGRLDNADPAVHLLMTNDPEEAKMLAEEMESYNKE
RQQIVTQITEEAIQQVEEKYPPEDNGFIIVEGNNWNAGVIGIVASRLVDRFYRPTIVLSLDEDKGLAKGSARSIAGFDLF
ENLSECRDILPHFGGHPMAAGMTLKIEDVNELRQRMNQKALEILTDEDFTPITDVDIECKVEEVTLATIEQLEMLAPFGV
SNPKPKVLVKGVLPQQIRQIGNKSNHLKLVIEQDGSSLDCVGFGFGETYHHVSPGASLDVLGELSINEWNNFRKPQLFLK
DIRVTDWQLFDIRSIKQLNQTLNGIDKTKLHILYFNESTLEEINLHADLRPYASMVTNDTNEDLTGKYVVILDIPSEEAL
LSNLLENSTPERIYASFYQKENHFFSTIPTREHFKWFFALLAKKGSFDLRKHAEDIAKHRGWSKETVDFISQVFFDLEFV
TIDKGFIALNHAAKKRDFEESPTYRKKQQQVMLENLFLYSSYKQLKVWFDQHLTKQCTVHS

Nucleotide


Download         Length: 2346 bp        

>NTDB_id=616417 LG321_RS15485 WP_404458764.1 3004340..3006685(-) (recJ) [Sutcliffiella horikoshii strain ABH-541]
TTGTTAGCTTCTAAATCAAGATGGAATGTAAATGTATCGAGTATAGAACAGGTTGAGCAATTAGCACAGTCTTTAGATAT
TGCCCCTCTTATTGCTTCCCTTTTGGTAAACAGAGGGTTTGACACGATAGATGCAGCAAAAGAATTTTTATATACAAATG
ATCAAGAGTTTCATGATCCTTTTTTAATGGAGGATATGGACAAGCTTGTGGAGAGAGTAAATCAAGCGATTGCAAAGGAA
GAGAAGATCCTTGTGTTTGGCGACTATGATGCAGATGGAGTCAGCAGTACCACCGTTATGGTGACTGCGTTACGAGAAAT
CGGTGCACTGGTTGATTTTTATATTCCAAACCGTTTTACAGAAGGCTACGGACCAAATGAAAATGCCTTCAAACAAGCGA
AAGAAAACGGATATTCTGTCATTATCACAGTCGACACAGGAATCTCCGCCATCAATGAAGCAAAAGTGGCAAAAGAACTT
GGGGTGGACCTTATCATCACCGATCACCATGAGCCTGGACCGGAATTGCCCGATGCTTTTGCGATCATTCACCCGAAAAA
AGAAACTTGCTCTTATCCGTTTGATGACCTAGCGGGTGTTGGTGTTGCTTACAAGGTCGCGCATGCCCTTCTTGGAAAAA
ATCCAGAGCATCTCCTTGATGTGGCAGCGATCGGAACCATTGCCGATTTGGTTCCGTTAGTCGGGGAGAACAGATTGCTT
GCCTCTAAAGGAATCAAAAAGATGCAACAGACCACACGTGTGGGACTGAAAGCTCTTCTTCAAAAATGCGGAGTGGAATT
GCATACGGTAACAGAAGAGACAGTAGGGTTTTCGATCGGACCGAGAATCAATGCGGTAGGGCGACTGGACAATGCAGACC
CGGCAGTTCATCTTCTTATGACAAATGATCCGGAAGAAGCCAAAATGCTTGCAGAGGAAATGGAAAGTTACAACAAAGAG
AGACAGCAAATTGTGACCCAGATTACCGAAGAAGCCATTCAACAGGTGGAAGAGAAATACCCGCCAGAGGATAATGGTTT
TATTATTGTGGAGGGAAATAATTGGAATGCAGGAGTGATCGGGATTGTGGCATCACGCCTTGTGGACCGTTTTTACCGAC
CAACCATCGTGCTTAGCCTTGATGAGGATAAAGGGTTGGCAAAAGGTTCTGCGCGTTCCATTGCCGGATTTGATCTCTTT
GAAAACCTTTCGGAATGCCGGGATATTTTGCCGCATTTCGGTGGACATCCAATGGCGGCCGGGATGACGTTGAAAATAGA
AGATGTAAATGAGCTCAGACAAAGAATGAATCAAAAGGCGTTAGAAATTCTGACAGATGAAGATTTCACTCCTATTACGG
ACGTTGATATTGAATGCAAAGTGGAAGAGGTAACACTTGCAACGATAGAGCAGTTGGAAATGCTTGCTCCATTCGGAGTG
TCCAATCCAAAACCAAAAGTGCTGGTAAAAGGTGTACTGCCACAGCAAATTCGCCAGATTGGAAACAAAAGCAACCATCT
GAAACTGGTCATTGAACAGGATGGCAGTTCACTAGATTGTGTAGGCTTTGGCTTTGGAGAAACGTATCATCACGTCTCCC
CTGGGGCATCTCTTGACGTTTTGGGAGAACTCTCTATCAATGAATGGAACAATTTCCGCAAGCCTCAGCTTTTTTTGAAA
GATATCAGAGTGACAGATTGGCAACTTTTTGATATCCGTTCCATTAAACAGTTAAATCAAACGCTAAATGGAATAGATAA
AACAAAACTCCACATCCTATATTTTAATGAATCTACTTTGGAAGAAATTAATCTGCATGCTGATTTACGACCATATGCAA
GTATGGTAACAAATGATACTAATGAAGATTTGACAGGAAAGTATGTTGTCATACTGGATATCCCTTCTGAAGAAGCGCTC
CTATCAAATTTATTAGAAAATAGTACGCCTGAGCGAATCTATGCGTCCTTTTATCAAAAGGAGAACCATTTCTTTTCTAC
CATCCCGACGAGAGAGCACTTTAAATGGTTTTTCGCATTACTTGCTAAAAAAGGTTCCTTTGACCTCAGAAAGCATGCAG
AAGATATCGCCAAACACCGCGGCTGGTCAAAAGAAACAGTGGATTTCATATCACAGGTGTTTTTTGACTTAGAATTTGTT
ACAATAGACAAGGGTTTTATCGCATTAAACCATGCAGCGAAAAAAAGGGACTTTGAAGAGTCTCCAACTTATCGTAAAAA
GCAACAGCAAGTGATGCTTGAAAACTTGTTTTTATATTCTTCATATAAACAATTAAAAGTGTGGTTTGATCAGCATCTAA
CCAAGCAATGCACTGTTCATTCATAG

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

RecJ OB domain (RecJ_OB)

(455-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

53.915

99.744

0.538