Detailed information NTG0616416

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: LG321_RS15390
• Genome accession: NZ_CP085250
• Coordinates: 2983813..2986215 (-)
• Length: 800 a.a.
• NCBI ID: WP_404458747.1
• Uniprot ID: -
• Organism: Sutcliffiella horikoshii strain ABH-541
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2978813..2991215

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG321_RS15360 (LG321_15320)	-	2979166..2980524 (-)	1359	WP_404462672.1	NAD(P)-dependent oxidoreductase	-
LG321_RS15365 (LG321_15325)	-	2980656..2981546 (-)	891	WP_404458742.1	nitrilase-related carbon-nitrogen hydrolase	-
LG321_RS15370 (LG321_15330)	-	2982080..2982235 (-)	156	WP_010196047.1	YrzQ family protein	-
LG321_RS15375 (LG321_15335)	-	2982258..2982452 (-)	195	WP_047969446.1	hypothetical protein	-
LG321_RS15380 (LG321_15340)	-	2982468..2982941 (-)	474	WP_404458744.1	PRC-barrel domain-containing protein	-
LG321_RS15385 (LG321_15345)	-	2983128..2983727 (+)	600	WP_404458746.1	hypothetical protein	-
LG321_RS15390 (LG321_15350)	recD2	2983813..2986215 (-)	2403	WP_404458747.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LG321_RS15395 (LG321_15355)	-	2986234..2986890 (-)	657	WP_404458748.1	tetratricopeptide repeat protein	-
LG321_RS15400 (LG321_15360)	mnmA	2986978..2988093 (-)	1116	WP_404347024.1	tRNA 2-thiouridine(34) synthase MnmA	-
LG321_RS15405 (LG321_15365)	-	2988112..2989260 (-)	1149	WP_404458750.1	cysteine desulfurase family protein	-
LG321_RS15410 (LG321_15370)	cymR	2989308..2989724 (-)	417	WP_088018959.1	cysteine metabolism transcriptional regulator CymR	-
LG321_RS15415 (LG321_15375)	-	2989757..2990431 (-)	675	WP_404458751.1	YitT family protein	-

Sequence

Protein

• Length: 800 a.a.
• Molecular weight: 90061.35 Da
• Isoelectric Point: 4.8231

>NTDB_id=616416 LG321_RS15390 WP_404458747.1 2983813..2986215(-) (recD2) [Sutcliffiella horikoshii strain ABH-541]
MKDQKQQSSLDLFEENEKFIKGSHLVTIFHNESNMYSVVRIRVTETNVAYDEKEAVVTGYFPRIHEDETYIFFGQMKEHP
RFGLQFHVEHFRKDIPQTRHGIVQYLSSDLFSGIGRKTAEKIADALGENAISKILENPSVLDSIPKLAGDKAKSLYDTLM
EHQGLEQVMIALSQFGFGPQLSMKIYQAYKDQTIETLQKNPYELVETVEGIGFARADELGNHFGISGNHPDRIRAGCLYM
LEQHSMQEGHCYVFEDQLTEAVVRLLNEKQHGLVAESDISREIMQLTEEGKLKAEEGKVYLPSLYFSEQGVVTNIKRVLE
QTQYADQFPESEFLLALGELEDRLKVQYAPSQKEAIQQALMTPMLLLTGGPGTGKTTVIKGIVELYADLHGCSLEPNDYS
KDDPFPIMLVAPTGRAAKRMSEATGLPSLTIHRLLGWNGSEGFQHDEENPISGKLLIVDEVSMVDIWLANQLFKSLPEDI
QVVLVGDEDQLPSVGPGQVLKDLLASRVIPTVQLTDIYRQADGSSIIELAHDMKDGAVPSDISSGQKDRSFIKCGQSQIL
DVVKKVCANAQRKGYTARDIQVLAPMYRGTAGIDKLNEMLQELFNPKSDQRRELCFGNVVYRTGDKVLQLVNQPESHVFN
GDIGEVVSIFYAKENTEKQDMVIVSFDGNEVTYTKQDLGQITHAYCCSIHKSQGSEFPIVVLPVVKSYYRMLRRNLLYTA
VTRAKRFLILCGEEEALKLGVQRADEMARQTSLKERLQTRESGTLPDEEVIDPVLQEVPFWKDANIGMENVSPYDFMDEE

Nucleotide

• Length: 2403 bp

>NTDB_id=616416 LG321_RS15390 WP_404458747.1 2983813..2986215(-) (recD2) [Sutcliffiella horikoshii strain ABH-541]
ATGAAGGACCAAAAGCAGCAATCCTCACTCGATTTGTTCGAGGAAAATGAAAAGTTTATTAAAGGGTCGCATCTTGTCAC
CATCTTCCATAATGAATCCAATATGTATTCAGTGGTGCGGATCCGAGTGACGGAGACGAATGTTGCGTATGATGAAAAAG
AAGCGGTCGTTACTGGTTATTTCCCTCGCATTCATGAAGACGAGACATACATATTTTTTGGACAGATGAAGGAACATCCT
CGTTTTGGGCTTCAATTTCATGTTGAGCACTTTCGTAAGGACATTCCACAAACACGACACGGTATTGTCCAATATCTATC
AAGCGATTTGTTTTCAGGCATCGGAAGAAAAACGGCGGAAAAAATTGCAGATGCACTAGGTGAAAATGCCATCTCCAAAA
TACTTGAAAATCCTTCAGTGCTGGATTCCATTCCAAAGCTTGCCGGTGATAAAGCGAAATCGCTATATGACACATTGATG
GAACATCAAGGATTGGAACAGGTCATGATTGCCCTGTCACAGTTTGGTTTTGGTCCGCAATTGTCCATGAAAATTTATCA
AGCCTATAAAGATCAGACGATTGAAACGCTCCAAAAGAACCCATACGAACTTGTGGAAACAGTAGAGGGTATTGGCTTTG
CCAGAGCAGATGAACTTGGAAATCACTTCGGGATATCGGGAAATCATCCAGACCGCATCAGGGCAGGCTGCCTGTATATG
CTGGAACAGCATTCCATGCAGGAGGGGCACTGTTACGTGTTTGAAGACCAGCTTACAGAAGCGGTCGTCAGACTTTTAAA
CGAAAAGCAGCATGGCCTTGTTGCAGAGTCTGACATTTCTCGGGAAATTATGCAATTGACTGAAGAAGGAAAGCTTAAAG
CGGAAGAAGGTAAAGTCTATTTACCTAGTCTCTATTTTTCAGAGCAAGGTGTGGTAACCAATATCAAAAGGGTGCTGGAG
CAAACTCAATATGCCGACCAGTTTCCTGAGTCAGAATTCCTCCTTGCCTTAGGTGAATTAGAAGACAGATTGAAGGTTCA
ATATGCTCCTTCGCAAAAAGAAGCCATACAGCAAGCATTAATGACTCCCATGCTTCTTTTGACAGGTGGGCCAGGAACAG
GTAAAACGACCGTTATTAAAGGAATCGTTGAACTGTACGCAGACCTTCATGGTTGTTCATTGGAACCTAATGATTACAGC
AAAGATGATCCTTTTCCGATTATGCTTGTCGCCCCAACAGGCCGTGCTGCCAAACGCATGAGCGAGGCGACTGGCCTTCC
TTCTCTTACTATTCATAGGCTACTCGGTTGGAATGGTTCGGAAGGGTTTCAACATGACGAAGAAAACCCCATCTCAGGTA
AGCTTTTGATTGTGGATGAGGTGTCAATGGTGGATATTTGGCTTGCCAATCAACTGTTTAAATCTCTTCCTGAGGATATA
CAAGTCGTATTAGTGGGAGATGAAGATCAGCTACCCTCCGTTGGTCCAGGTCAAGTATTAAAGGACTTACTCGCGTCCAG
AGTGATTCCGACCGTTCAATTGACTGATATCTACAGACAGGCAGATGGTTCATCCATCATTGAGTTGGCCCACGATATGA
AGGATGGTGCAGTGCCATCAGACATCTCATCTGGACAGAAGGACCGATCTTTTATCAAATGCGGACAGTCGCAAATTTTG
GATGTAGTAAAAAAAGTATGTGCCAACGCGCAAAGAAAGGGCTATACTGCCCGCGATATCCAGGTGCTTGCACCAATGTA
CAGAGGGACAGCGGGAATAGATAAACTTAATGAAATGCTTCAGGAGCTTTTCAATCCTAAAAGTGACCAGCGGCGTGAAT
TATGTTTTGGCAATGTTGTATACCGAACCGGTGACAAAGTGCTGCAGCTTGTCAATCAACCGGAAAGTCATGTTTTCAAT
GGTGACATTGGTGAAGTTGTTTCCATCTTTTATGCGAAAGAAAATACCGAAAAACAGGACATGGTCATCGTATCCTTTGA
TGGCAATGAAGTTACTTATACGAAGCAAGATCTCGGGCAGATAACTCATGCATATTGTTGTTCCATACATAAGTCTCAAG
GAAGTGAGTTTCCGATTGTGGTGTTGCCTGTAGTAAAGAGCTATTACAGGATGTTACGACGAAATCTTCTTTACACAGCT
GTTACACGGGCGAAGAGATTTTTAATTCTTTGCGGCGAAGAAGAAGCATTAAAGCTTGGCGTGCAACGCGCGGATGAGAT
GGCAAGGCAAACATCCTTAAAAGAAAGGCTTCAAACAAGAGAGTCCGGAACTTTACCAGACGAGGAAGTCATTGATCCTG
TACTTCAAGAAGTTCCTTTTTGGAAAGATGCTAACATCGGTATGGAAAATGTCAGTCCATATGATTTTATGGATGAAGAA
TAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (348-556)

• Helix-hairpin-helix containing domain (HHH_RecD2) (161-252)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (596-666)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (683-731)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	63.784	99.75	0.636